Locus 6835

Sequence ID 2L_DroMel_CAF1
Location 19,114,786 – 19,114,900
Length 114
Max. P 0.851557
window10899

overview

Window 9

Location 19,114,786 – 19,114,900
Length 114
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 74.07
Mean single sequence MFE -30.42
Consensus MFE -14.81
Energy contribution -16.12
Covariance contribution 1.31
Combinations/Pair 1.13
Mean z-score -1.96
Structure conservation index 0.49
SVM decision value 0.79
SVM RNA-class probability 0.851557
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19114786 114 + 22407834
ACUUGGCCCUCGAGCUAAUGGGAAGGUCGCCUCAACCCCCUAAACAAAAUGAUAUAUAUAUAUAGAUAUAUAUAGCAAUGGAAAUGUCCGAUCGGUGCGACUUUCCCGUGACUA---
...((((......))))(((((((((((((....(((............((.(((((((((....))))))))).)).((((....))))...)))))))))))))))).....--- ( -35.40)
>DroSec_CAF1 2063 112 + 1
ACUUGGCCCUCGAGCUAAUGGGAAGGUCGCCUCAAACCUCUAAACAAAGUGAUAUAU--AUAUAGAUAUAUAUAGAUAUGGAAAGGUCCGAUCGGCGCGACUUUCCCGUGACUA---
...((((......))))(((((((((((((.((..................((((((--((....)))))))).(((.((((....))))))))).))))))))))))).....--- ( -35.30)
>DroSim_CAF1 2350 112 + 1
ACUUGGCCCUCGAGCUAAUGGGAAGGUCGCCUCAAACCUCUAAACAAAGUGAUAUAU--AUAUAGAUAUAUAUAGCAAUGAAAAGGUCCGAUCGGCGCGACUUUCCCGUGACUA---
...((((......))))(((((((((((((.....((((.....((..((.((((((--((....)))))))).))..))...))))((....)).))))))))))))).....--- ( -33.30)
>DroEre_CAF1 2004 101 + 1
ACUUGGCCCUCGAGUU---GGGAAGGUCGCCGCAAGUCUCUAAACAAAAG----------UACAAGUAUAUUUAACAAUGGAAAGGUCCGAUCGGCGCGACUUUCCCGUGACUA---
(((((.....))))).---(((((((((((.((..(((.........(((----------((......)))))......(((....))))))..))))))))))))).......--- ( -30.50)
>DroYak_CAF1 2134 102 + 1
ACUUGGCCCUCGAGUUGAUGGGAAGGUCGCCUUACGUCUCUAAAUAAAAG----------UAUA--UAUAUUUAACAAUGGAAAGGUCCGAUCGGCGCCACUUUCCCGUGACUA---
............((((.((((((((((((((.........((((((....----------....--..))))))....((((....))))...))))..)))))))))))))).--- ( -25.80)
>DroPer_CAF1 7548 93 + 1
GUUUAGCCUUAGAGA-ACUAGGAAGGCCGCUGAGAGC-------------GAG--------CUG--GAUAUGCAACAAAGCAAAGGUCGGAUCGGAGAGACUUUCCCAUGACUAUAU
((((((((((((...-.))))).....(((.....))-------------).)--------)))--))).(((......)))..(((((....(((((...)))))..))))).... ( -22.20)
>consensus
ACUUGGCCCUCGAGCUAAUGGGAAGGUCGCCUCAAGCCUCUAAACAAAAUGAU_______UAUAGAUAUAUAUAACAAUGGAAAGGUCCGAUCGGCGCGACUUUCCCGUGACUA___
.((((.....))))...(((((((((((((......................................(((......))).....(((.....))))))))))))))))........ (-14.81 = -16.12 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:55 2006