Locus 683

Sequence ID 2L_DroMel_CAF1
Location 1,995,880 – 1,995,971
Length 91
Max. P 0.636872
window1116

overview

Window 6

Location 1,995,880 – 1,995,971
Length 91
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 75.24
Mean single sequence MFE -25.02
Consensus MFE -8.36
Energy contribution -8.12
Covariance contribution -0.24
Combinations/Pair 1.29
Mean z-score -1.80
Structure conservation index 0.33
SVM decision value 0.21
SVM RNA-class probability 0.636872
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1995880 91 - 22407834
AUGGAGUAAGAUGUCAGUUGCACUU-GCAUUUGCAC------CUGCAGUUGCAUUCGCCAUUUCCCGUCGCACUUGCAAUCUCGCAUUUAUUUAUUGU
...(((((.(((((.(((((((..(-(((.((((..------..)))).))))...((.((.....)).))...))))).)).))))))))))..... ( -20.60)
>DroPse_CAF1 15484 96 - 1
AUGGCAAAAGAUGUCAGCCUCUGUUUCCGUUUCCGCUUCGUGCGGCAGUUGCAAUUUCGACU-GCAGUUGCAGUGGCAAUCUUUCA-UUAUUUAUGAU
.(((((.....)))))(((.((((..(......(((.....)))(((((((......)))))-)).)..)))).)))......(((-(.....)))). ( -29.40)
>DroSec_CAF1 13569 91 - 1
AUGCAGUAAGAUGUCAGUUGCACUU-GCAUUCGCAC------CUGCAGUUGCAGUCGCCAUAUUCCGUCGCAGUUGCAAUCUCGCAUUUAUUUAUUGU
..((((((((((((.(((((((.((-((....((..------((((....))))..))(.......)..)))).))))).)).)))))...))))))) ( -24.70)
>DroSim_CAF1 10412 91 - 1
AUGCAGUAAGAUGUCAGUUGCACUU-GCAUUUGCAC------CUGCAGUUGCAGUCGCCAUUACCCGUCGCAGUUGCAAUCUCGCAUUUAUUUAUUGU
..((((((((((((.(((((((.((-((....((..------((((....))))..))(.......)..)))).))))).)).)))))...))))))) ( -24.40)
>DroPer_CAF1 14331 96 - 1
AUGGCAAAAGAUGUCAGCCUCUGUUUCCGUUUCCGCUUCGUGCGGCAGUUGCAAUUUCGACU-GCAGUUGCAAUGGCAAUCUUUCA-UUAUUUAUGAU
.(((((.....)))))(((..(((..(......(((.....)))(((((((......)))))-)).)..)))..)))......(((-(.....)))). ( -26.00)
>consensus
AUGGAGUAAGAUGUCAGUUGCACUU_GCAUUUGCAC______CUGCAGUUGCAAUCGCCAUU_CCCGUCGCAGUUGCAAUCUCGCAUUUAUUUAUUGU
.(((....((((((.((......)).))))))))).........((((((((...((........))..))))))))..................... ( -8.36 =  -8.12 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:48 2006