| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,085,160 – 19,085,268 |
| Length | 108 |
| Max. P | 0.669203 |
| Location | 19,085,160 – 19,085,268 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.17 |
| Mean single sequence MFE | -34.48 |
| Consensus MFE | -26.12 |
| Energy contribution | -26.28 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19085160 108 + 22407834 --CGAACUGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GU----CAUGGAUAUGGUCGGAUAUGGUAACGGGA --(((((((((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..))))-))----(((....))).)))............... ( -33.00) >DroPse_CAF1 10709 103 + 1 --GCAGCGGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GC----CAUGGAUACGGACGGAUGUGGCUG----- --......(((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..)))(-((----((((....(....)..))))))).----- ( -34.60) >DroEre_CAF1 6693 106 + 1 --CAAACUGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GU----CAUGGAUAUGGGCGGAUAUGG--ACGGGA --...((((((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..))))-))----..((..((((......)))).--.))... ( -33.50) >DroWil_CAF1 13564 94 + 1 --UCGGCGAGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGAGCGGCAU----CAUGCGAAUGG----AUG----------- --..............(((((((((.((((...(((((((.......)))))))...)).....(((.((((......))))----)))))))))))----)))----------- ( -28.20) >DroAna_CAF1 8351 114 + 1 UUCCAGCUGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGUGCCA-GCACAGCACGGAUCUGGAUGGAUAUUGUCGUGGGG ..((.(((((((..(((((.(((((((.((...(((((((.......)))))))...)).))))))).))))).)))))-))....(((((((((....))))....))))))). ( -43.00) >DroPer_CAF1 8335 103 + 1 --GCAGCGGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA-GC----CAUGGAUACGGACGGAUGUGGCUG----- --......(((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..)))(-((----((((....(....)..))))))).----- ( -34.60) >consensus __CCAGCGGGUAAAUGCGUCCAUUUAGCGGCAAACAAGCGACAGAUCCGCUUGUAAUCCUUUAAGUGUAUGCAGCGCCA_GC____CAUGGAUAUGGACGGAUAUGG__G_____ ........(((...(((((.(((((((.((...(((((((.......)))))))...)).))))))).)))))..)))..................................... (-26.12 = -26.28 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:50 2006