| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 19,081,923 – 19,082,018 |
| Length | 95 |
| Max. P | 0.785264 |
| Location | 19,081,923 – 19,082,018 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 75.57 |
| Mean single sequence MFE | -27.82 |
| Consensus MFE | -16.26 |
| Energy contribution | -16.98 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.785264 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 19081923 95 + 22407834 AGGGUGCAAUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC-AAAACAGCUAAAUAACAGAUGAAACAAAAACUCGGCUAUAUAUC .((((....((...(((((((((..(((.(.....).)))..)))))))))-....((.((.......)).))...))...))))........... ( -22.90) >DroSec_CAF1 4219 95 + 1 AGGGUGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC-AAAACAGCAAAAUAGCAGAUGAAACAAAAACUCGGCUAUAUCUC .(((((..(((((.(((((((((..(((.(.....).)))..)))))))))-......((......))..............)))))...))))). ( -28.40) >DroSim_CAF1 4154 95 + 1 AGGGUGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC-AAAACAGCUAAAUAGCAGAUGAAACAAAAACUCGGCUAUAUCUC .(((((..(((((.(((((((((..(((.(.....).)))..)))))))))-......(((....)))..............)))))...))))). ( -29.30) >DroEre_CAF1 4052 79 + 1 AGGGUGCACUGGGGGUUGCGGGCACGCCCUUUAAAAUGGGCAGCCUGCAGCUAAAACAGC---------GCUGCAACAAAAACUGAGC-------- ...((((.(((..((((((((((..((((........)))).))))))))))....))).---------)).))..............-------- ( -33.40) >DroYak_CAF1 5914 79 + 1 AGGGCGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGACAGCCUGCAGCUAAAACAGC---------GCUGGAACAAAAGCUCAGC-------- .((((((.(((..((((((((((..(.((........)).).))))))))))....))).---------))((...))...))))...-------- ( -29.00) >DroPer_CAF1 5559 75 + 1 GUGAUGCUUUGGGGGUGGCGGACACGCCCUGCAAAAUGGCUCGCCUGCAGCAGAAACAGCGA--CAGCAGCAGCAAC------------------- ....(((...(((.(((.....))).))).))).....(((.(((((..((.......))..--)))..)))))...------------------- ( -23.90) >consensus AGGGUGCACUGGGGGUUGCGGGCACGCCCUGUAAAAUGGCCAGCCUGCAGC_AAAACAGC_A__UAGCAGAUGAAACAAAAACUCGGC________ ........(((...(((((((((..(((.(.....).)))..))))))))).....)))..................................... (-16.26 = -16.98 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:48 2006