Locus 6821

Sequence ID 2L_DroMel_CAF1
Location 19,066,132 – 19,066,231
Length 99
Max. P 0.681002
window10882

overview

Window 2

Location 19,066,132 – 19,066,231
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.55
Mean single sequence MFE -24.37
Consensus MFE -17.10
Energy contribution -17.27
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.70
SVM decision value 0.31
SVM RNA-class probability 0.681002
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19066132 99 + 22407834
AACUCC---AGCUCCUGCCAAACCACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AC--CGGCAUCCU--CAUCGGC
......---.(((..((((.......((((((......(((...))).....))))))..........(((....)))...)))--).--.))).....--....... ( -21.10)
>DroVir_CAF1 6659 94 + 1
UCUUGU---UGCUCCUGCCAAACUGCCAGCUGAUUUGCUUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGAC--AUUACGGGACCCA---------
((((((---((.((.(((((....((((((......)).))))...........(((((......)))))....)))))..)))--)..))))))....--------- ( -23.10)
>DroSec_CAF1 5155 99 + 1
AACUCC---AGCUCCUGCCAAACCACCAGCUGAUCACAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AU--CGGCAUCCU--CAUCGGC
......---.......(((......(((.(((....))))))............(((((..((.....(((....)))...)).--.)--)))).....--....))) ( -21.70)
>DroSim_CAF1 5107 99 + 1
AACUCC---AGCUCCUGCCAAACCACCAGCUGAUCACAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AC--CGGCAUCCU--CAUCGGC
......---.(((..((((.......((((((......(((...))).....))))))..........(((....)))...)))--).--.))).....--....... ( -21.10)
>DroYak_CAF1 5070 88 + 1
AGCUCC---AGCUCCUGCCAAACCACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU--AC--CGGCA-------------
(((...---.)))...(((..(((..((((((......(((...))).....))))))..........(((....)))...)))--..--.))).------------- ( -21.50)
>DroAna_CAF1 5157 104 + 1
--GUCGGGAAGGUCUUGCCAAACCACCAGCUGAUCCGAGAGGAUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGGACAC--CGGCAACCGGCAACCGGC
--(((((....((((((.........((((((((((....)))))........)))))..........(((....)))..)))))).)--))))..((((...)))). ( -37.70)
>consensus
AACUCC___AGCUCCUGCCAAACCACCAGCUGAUCCCAGUGGCUCAUAAAAACAGCUGACUCCAAUUAGCCACAUGGCACCGGU__AC__CGGCAUCCU__CAUCGGC
...............((((.......((((((....................))))))..........(((....))).............))))............. (-17.10 = -17.27 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:40 2006