Locus 6802

Sequence ID 2L_DroMel_CAF1
Location 19,015,616 – 19,015,720
Length 104
Max. P 0.613163
window10857

overview

Window 7

Location 19,015,616 – 19,015,720
Length 104
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 72.27
Mean single sequence MFE -21.99
Consensus MFE -8.34
Energy contribution -10.58
Covariance contribution 2.24
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 0.38
SVM decision value 0.16
SVM RNA-class probability 0.613163
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 19015616 104 - 22407834
-CGCCGUCUAAAGUCGUUGUCUGACAUCCCCAACCA-CAGGCCCACUUCCUGACCCACCACGCCCCC------UCAUCAGGCGUCAGGCAUCACCCACCAGCUACCACUCAC
-.((((.(....).)).((((((((...........-((((.......)))).........(((...------......)))))))))))..........)).......... ( -21.00)
>DroSec_CAF1 20178 104 - 1
-CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA-CAGGCCCACUUCCUGACCCACCACGCCCCC------UCAUCAGGCGUCAGGCAUCACCCACCAGCUACCAUUCAC
-.((((.(....).)).((((((((...........-((((.......)))).........(((...------......)))))))))))..........)).......... ( -21.00)
>DroEre_CAF1 19425 93 - 1
-CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA-CAGGCCCCCUUCCUGCCCCACCACGCCCCG------UCGUCAGGCGUCAGGCACCACCCACCGA-----------
-..............(.((((((((...........-.(((.......)))(((..((.(((...))------).))..))))))))))).).........----------- ( -20.20)
>DroWil_CAF1 9945 89 - 1
GUGCGGACUAAAGUCGUUGUCUGACACCCGGACCCAGCAAAUCCGAU-------------CCCCCCC------UCGUCAGCCAACGG-C---CCCGCCCGUCUACCUUUCAA
(.((((......(((((((.(((((....(((.........)))((.-------------.......------))))))).))))))-)---.)))).)............. ( -23.50)
>DroYak_CAF1 15504 102 - 1
-CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA-CAGGCCCACUUCCUGCCCCGCCACACCCCAUCACCAUCAUCAGGCGUCAGGCACCACCCACCAGGCA--------
-.(((.......((.((.(((((((...........-((((.......))))....(((....................)))))))))))).))......))).-------- ( -24.27)
>consensus
_CGCCGUCUAAAGUCGUUGUCUGACACCCCCAACCA_CAGGCCCACUUCCUGACCCACCACGCCCCC______UCAUCAGGCGUCAGGCACCACCCACCAGCUACC__UCA_
...............(.((((((((............((((.......)))).........(((...............))))))))))).).................... ( -8.34 = -10.58 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:17 2006