Locus 680

Sequence ID 2L_DroMel_CAF1
Location 1,986,024 – 1,986,136
Length 112
Max. P 0.610548
window1112

overview

Window 2

Location 1,986,024 – 1,986,136
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.51
Mean single sequence MFE -29.28
Consensus MFE -19.44
Energy contribution -20.38
Covariance contribution 0.95
Combinations/Pair 1.17
Mean z-score -1.28
Structure conservation index 0.66
SVM decision value 0.16
SVM RNA-class probability 0.610548
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1986024 112 - 22407834
UGCAAUGAUUAAUAUAUCAUUAUUAUUCUAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGCCCACCCGAUGCCAUCUUGGGUGUCACGGAAGCCUUCAAGAAGGACACCAA
...((((((......)))))).........((((.....))))...(((((((((..((((....)))).)).)))))))((((((.(....).(((....))))))))).. ( -29.60)
>DroGri_CAF1 25235 99 - 1
----------G---CCUUAUUUUAUUUUCAGAUCCACAUGGUUCUCCGAGGUACAAAUGGGUCCACCGGAUGCCAUUCUGGGUGUUACCGAGGCCUUCAAGAAGGAUCAAAA
----------.---................(((((......((((..(((((...(((((((((...)))).)))))((.((.....)).)))))))..))))))))).... ( -25.00)
>DroSec_CAF1 557 112 - 1
UGCAAAGAAUAAUAUAUUAUUAUUAUUCCAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCUUGGGCGUCACGGAAGCCUUCAAGAAGGACACCAA
......((((((((......))))))))..........((((..((((..........(((....)))((((((......)))))).)))).(((((....)))).))))). ( -32.60)
>DroEre_CAF1 556 110 - 1
UACAAAUAUUAA-A-AGUAUUAUCAUUUUAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCCUGGGCGUUACGGAGGCCUUCAAGAAGGACACCAA
....(((((...-.-.))))).................((((((((((..........(((....)))((((((......)))))).))))))((((....))))..)))). ( -27.70)
>DroYak_CAF1 1666 111 - 1
UGAAAAUAUUAA-AUAACAUUAUUAUUUCAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCUUGGGCGUUACGGAGGCCUUUAAGAAGGACACCAA
(((((.((.(((-......))).)))))))........((((((((((..........(((....)))((((((......)))))).))))))((((....))))..)))). ( -27.90)
>DroAna_CAF1 630 109 - 1
UCCAAU--UUAAAACCCCAAUG-UCUUUCAGCUCAUCGUGGUUCACUGAAACGAAAAUGGGUCCUCCCGACGCCAUUUUGGGUGUUACGGAGGCCUUCAAGAAGGACAAAAA
......--............((-((((((.((((((..(.(((......))).)..))))))(((((.((((((......))))))..))))).......)))))))).... ( -32.90)
>consensus
UGCAAA_AUUAA_AUAUCAUUAUUAUUUCAGAUCAACAUGGUUCUCCGAGGUGCAGAUGGGUCCACCCGAUGCCAUCUUGGGCGUUACGGAGGCCUUCAAGAAGGACACCAA
......................................((((((((((..........(((....)))((((((......)))))).))))))((((....))))..)))). (-19.44 = -20.38 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:44 2006