Locus 679

Sequence ID 2L_DroMel_CAF1
Location 1,982,659 – 1,982,779
Length 120
Max. P 0.548570
window1111

overview

Window 1

Location 1,982,659 – 1,982,779
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -41.43
Consensus MFE -24.85
Energy contribution -22.72
Covariance contribution -2.13
Combinations/Pair 1.55
Mean z-score -1.45
Structure conservation index 0.60
SVM decision value 0.03
SVM RNA-class probability 0.548570
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1982659 120 + 22407834
UUCACGCCCUACGUCGGCAACGGCUACCUGGGCCUGGAGAUCGCACACGACGCUUUCCUGAACAUCAAGAAUGGCAGGGCCAUGCAGCUGCCUAUUCCUUUCCAGCCGGUGGUCUCCGUU
.....((((...((((....)))).....))))..(((((((((.((.((.....)).))........(((((((((.((...))..))))).))))...........)))))))))... ( -41.10)
>DroPse_CAF1 32141 120 + 1
UUCACGCCAUAUAUUGGCAACGGUUACAUCGGUUUGGAGAUAGCCCACGAUGCGUCGCUGAACAUCAAGCACGGUCGUGCCAUGCAACUGCCCAUCCGUUUUCAGCCGAUUGUGUCCGUG
.....((((.....)))).((((.((((((((((.((((((....((((((.(((.(((........))))))))))))....((....))......)))))))))))).)))).)))). ( -41.20)
>DroYak_CAF1 8424 120 + 1
UUCACGCCCUACGUGGGCAACGGCUAUCUGGGGCUGGAGAUCACACACGACGCCUAUCUGAACAUCAAGAAUGGCAGGGCCAUGCAGCUGCCCAUUCGCUUCCAGCCGGUGGUCUCCGUU
.....((((((.((((.(...).)))).)))))).(((((((((....((.(((..(((........)))..))).((((.........))))..))((.....))..)))))))))... ( -43.70)
>DroAna_CAF1 12180 120 + 1
AUCACACCCUAUGUGGGUAAUGGCUAUCUGGGUCUGGAGAUAGCCCAUGAUGCCUUCCUGAACAUCAAGCACGGCCGGGCCAUGCAGCUGCCCAUUCGCUUCCAGCCGGUGGUUUCUGUU
....((((....(((((((..(((.(((((((.(((....))))))).))))))..............(((.(((...))).)))...)))))))..((.....)).))))......... ( -37.70)
>DroMoj_CAF1 22453 120 + 1
UACACGCCCUAUGUCGGUAACGGUUAUAUUGGCAUGGAGGUGUCGCAUGGUGCGUCACUGAAUAUAAAACAUGGACGCGCCAUGCAGCUACCCAUACGCUUCUAUCCAUUAUUGUCCGUC
.....(((.......))).((((..(((.(((.((((((((((.((((((((((((..((.........))..)))))))))))).(.....)..))))))))))))).)))...)))). ( -43.70)
>DroPer_CAF1 25101 120 + 1
UUCACGCCAUAUAUUGGCAACGGCUACAUCGGUUUGGAGAUAGCCCACGAUGCGUCGCUGAACAUCAAGCACGGUCGUGCCAUGCAACUGCCCAUCCGUUUUCAGCCGAUUGUGUCCGUG
.....((((.....)))).((((.((((((((((.((((((....((((((.(((.(((........))))))))))))....((....))......)))))))))))).)))).)))). ( -41.20)
>consensus
UUCACGCCCUAUGUCGGCAACGGCUACAUGGGUCUGGAGAUAGCCCACGAUGCGUCCCUGAACAUCAAGCACGGCCGGGCCAUGCAGCUGCCCAUUCGCUUCCAGCCGGUGGUGUCCGUU
.....((((.....)))).((((..(((..((.((((((((..........((((..(((..(.....)..)))..))))...((....))......))))))))))...)))..)))). (-24.85 = -22.72 +  -2.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:43 2006