Locus 6784

Sequence ID 2L_DroMel_CAF1
Location 18,956,449 – 18,956,566
Length 117
Max. P 0.663689
window10827

overview

Window 7

Location 18,956,449 – 18,956,566
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.98
Mean single sequence MFE -45.08
Consensus MFE -31.94
Energy contribution -34.17
Covariance contribution 2.23
Combinations/Pair 1.26
Mean z-score -1.23
Structure conservation index 0.71
SVM decision value 0.27
SVM RNA-class probability 0.663689
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18956449 117 + 22407834
AUAAGCGAGGUCUUCUCUUCGCUGGAAACCUCCAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAAGA---GGUGGCGGUGUUUGCUCCUCCCGCUACCAAGCCGAUAGGCGUGGCC
...((((.(.((((((((.(.(((((....))))).).)))))))).).(((((((....))).)))).((---((.((((.....)))))))).)))).(((.(((....))).))).. ( -47.70)
>DroGri_CAF1 13536 104 + 1
AUCAGCGAAGUCUUAUCCUC---------CUCCAGUGUGGGCGAUAGCAGCCACUUGGAUGAGCUGGAUGA---GACCAUUGGAUUGCCGCCGCCAGC---UGUGGCAAUCGGCGUAAC-
....((...(((((((((((---------.(((((.((((((....))..))))))))).))...))))))---))).....(((((((((.(....)---.))))))))).)).....- ( -43.50)
>DroSim_CAF1 11034 117 + 1
AUAAGCGAGGUCUUCUCUUCGCUGGAAACCUCCAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAUGA---GGUGGCGGUGUUUGCUCCUCCCGCUACCAAGCCGAUAGGCGUGGCC
...((((.(.((((((((.(.(((((....))))).).)))))))).)((((((((....))).)))))((---((.((((.....)))))))).)))).(((.(((....))).))).. ( -48.50)
>DroEre_CAF1 19052 117 + 1
AUAAGCGAAGUCUUCUCUUCGCUGGAAACCUCUAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAUGA---GGUGGCGGUGUUUGCUCCUCCCGCCACCAAGCCGAUAGGCGUGGCC
....((....((((((((.(.(((((....))))).).)))))))).(((((((((....))).)))))).---((((((((.(.........)))))))))..(((....)))...)). ( -48.20)
>DroYak_CAF1 11421 117 + 1
AUAAGCGAGGUUUUCUCUUCGCUGGAAACCUCCAAAGUGGGCGAGAGCAUCCACUUGGAUGAGUUGGAUGA---GGUGGCGGUGUUUGCUCCUCCCGUUACCAAGCCGAUAGGCGUGGCC
...(((((((......)))))))((.(((((((((.((((((....))..))))))))).).)))....((---((.((((.....))))))))))....(((.(((....))).))).. ( -42.70)
>DroAna_CAF1 13670 111 + 1
AUCAGAGAGGUCUUCUCCUCGCUGGACACCUCCAGGGUGGGGGAGAGCAGCCACUUGGACGAGUUGGAUGAAUGGGGCGCAGUGCUG---------GCUACCGAGCUGAGGGGCGUGACC
.(((....(.((((((((.(.(((((....))))).).)))))))).).(((.((..(...(((..(.....((.....))...)..---------)))......)..)).))).))).. ( -39.90)
>consensus
AUAAGCGAGGUCUUCUCUUCGCUGGAAACCUCCAGGGUGGGGGAGAGCAUCCACUUGGAUGAGUUGGAUGA___GGUGGCGGUGUUUGCUCCUCCCGCUACCAAGCCGAUAGGCGUGGCC
..........((((((((.(.(((((....))))).).)))))))).(((((((((....))).))))))....((((((((............))))))))..(((....)))...... (-31.94 = -34.17 +   2.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:49 2006