Locus 678

Sequence ID 2L_DroMel_CAF1
Location 1,981,330 – 1,981,450
Length 120
Max. P 0.506106
window1110

overview

Window 0

Location 1,981,330 – 1,981,450
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -45.49
Consensus MFE -36.69
Energy contribution -36.38
Covariance contribution -0.31
Combinations/Pair 1.22
Mean z-score -1.37
Structure conservation index 0.81
SVM decision value -0.05
SVM RNA-class probability 0.506106
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1981330 120 - 22407834
GGGCGGCGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCACUUUUCGCUUUCCGCCUGGCGAACCUCGCCACUGGCACAUUUGUAGAUCGAUACCAAAACUAUUAAGCCCAAACC
(((((.((((.......(((((..(((((((..((.......))...)))))))..))))).((((.....)))))))).)......(((......)))............))))..... ( -43.70)
>DroSim_CAF1 7312 120 - 1
GGGCGGCGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCACUGCUCGCUUUCCGCCAGGCGAGCCUCGCCACUAGUACAUUUGUAGAUCGAUACCAAAACUAUGAAGCCCAAACC
(((((((((..((((.((((((..(((((....((((........)))))))))..))))).).))))..))))).........((..(((.............)))..))))))..... ( -48.82)
>DroEre_CAF1 7086 120 - 1
GGGCGGAGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCAUUUCUGGCCAUUCGCCUGCCGACUCUCGCUACUCGUACAAUUGUAGAUCGAUACCAAAACGAUGAGGCCCAAACC
((((((....)).(((((((((..((((((....((((((.....))))))....))))))..)))....))))))(((((......(((......))).......)))))))))..... ( -44.52)
>DroYak_CAF1 7118 120 - 1
GGGCGGAGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCAUUUCUGGUCAUCCGCCUGCCGACCCUCGCCACUCGUACAAUUGUAGAUCGAUACCAAAACGAUGAGGCCCAAUCC
((((.((((...(((((((((((((.((((((.((.......))))))).).))).))))).))))).))))....(((((......(((......))).......)))))))))..... ( -44.92)
>consensus
GGGCGGAGGUCCUUGGCGGCGGUGGGCGAAGUCGCAGAAGAAGCACUUCUCGCCAUCCGCCUGCCGACCCUCGCCACUCGUACAAUUGUAGAUCGAUACCAAAACGAUGAAGCCCAAACC
(((((((((...((((((((((..((((((((.((.......)))))))..)))..))))).)))))...)))))..((((......(((......)))....))))....))))..... (-36.69 = -36.38 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:41 2006