| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,942,261 – 18,942,376 |
| Length | 115 |
| Max. P | 0.687231 |
| Location | 18,942,261 – 18,942,376 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -30.48 |
| Consensus MFE | -20.40 |
| Energy contribution | -19.96 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.687231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18942261 115 - 22407834 UCUAGACCCUGGAGAGGAUUCACUCGUAUAGAGUGGAUGUUGGUAAUUGGUACUAUUGCCAUGGUCGGGAGUGCAG-GACACAUACAGCA---AACUGAAGAACAGGAUUUGGGAAAAA ((((((.((((...((.((((((((.....)))))))).))((((((.......))))))....((((...(((.(-........).)))---..))))....)))).))))))..... ( -33.10) >DroSec_CAF1 67971 115 - 1 UCUAGACCCUGGAGAGGAUUCGCUCGUAUAGAGUGGAUGUUGGAAAUUGGCACUAUUGCCAUGGUCGGGAGUGCAGGGACACGGAGAGCA---AGCUGAGGAACAGGAUUUG-GAAAAA ((((((.((((......((((((((.....)))))))).(..(....(((((....)))))((.((....(((......)))...)).))---..)..)....)))).))))-)).... ( -32.90) >DroSim_CAF1 68235 117 - 1 UCUAGACCCUGGAGAGGAUUCGCUCGUAUAGAGUGGAUGUUGGAAAUUGGUACUAUUGCCAUGGUCGGGAGUGCAGGGACACGGAGAGCACUGAACUGAGGAACAGGAUUUG--AAAAA ..((((.((((...((.((((((((.....)))))))).))......(((((....)))))...((((.(((((.............)))))...))))....)))).))))--..... ( -29.42) >DroEre_CAF1 66684 115 - 1 UCCAGACCCUGGAGAGAAUUCGGUCGAAUCGAGCGAAUGUUGGAAAUUGGUACUAUUGGCAUGGUCGGGAGUGCAGGGUUAAAGAUAGUC---AACUCAGAAAUAGGAUUUG-GAAAAA ((((((.((((......(((((.(((...))).)))))(((((..(((...(((....((((........))))..)))....)))..))---))).......)))).))))-)).... ( -30.10) >DroYak_CAF1 66827 88 - 1 UCCAGACCCUGGAGAGAAUUCGGUCGAAUAGAGCGAAUGUUGAAGACUGGUAGAAUUGCCAUGGUCGGGAGUGCAG------------------------------GAUUUG-GAAAAA ((((((.((((.(....(((((.((.....)).)))))......((((((((....))))..)))).....).)))------------------------------).))))-)).... ( -26.90) >consensus UCUAGACCCUGGAGAGGAUUCGCUCGUAUAGAGUGGAUGUUGGAAAUUGGUACUAUUGCCAUGGUCGGGAGUGCAGGGACACAGAGAGCA___AACUGAGGAACAGGAUUUG_GAAAAA (((.((((......((.((((((((.....)))))))).))......(((((....))))).)))).)))................................................. (-20.40 = -19.96 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:42 2006