Locus 6775

Sequence ID 2L_DroMel_CAF1
Location 18,939,627 – 18,939,718
Length 91
Max. P 0.623200
window10818

overview

Window 8

Location 18,939,627 – 18,939,718
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 86.81
Mean single sequence MFE -20.58
Consensus MFE -15.82
Energy contribution -15.70
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.61
Structure conservation index 0.77
SVM decision value 0.18
SVM RNA-class probability 0.623200
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18939627 91 - 22407834
ACGCCUUUGGAAAAUGCUACCAAGUCCACUGGCGUUGCAAAAUUCUGCGAUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA
..(((..((((...((....))..))))..)))(((((....((((................))))......(((......)))))))).. ( -18.89)
>DroSec_CAF1 64540 91 - 1
ACACCUUUGGAAAAUGCUACCAAUUCCACUGGCGUUGCAAAAUUCUGCGGUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA
..............((((.((.(((.((..((((((((....((((...((.......))..)))))))))))))).))).)))))).... ( -20.70)
>DroSim_CAF1 64778 91 - 1
ACACCUUUGGAAAAUGCUACCAAUUCCACUGGCGUUGCAAAAUUCUGCGGUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA
..............((((.((.(((.((..((((((((....((((...((.......))..)))))))))))))).))).)))))).... ( -20.70)
>DroEre_CAF1 63390 85 - 1
ACGACGUCGGAAAAUGCUGC------CACUGGCGUUGCGAAAUUCUGCGACAAGAACAACAAAGAAGCGACGCCUAAAAUAAGAGCUGCGA
....((.(((......((..------....((((((((....((((......))))(......)..)))))))).......))..))))). ( -19.02)
>DroYak_CAF1 63698 91 - 1
ACGCCGUCGAAAAAUGCUGCCCAGUCCACUGGCGCUGCCAAAUUCUGCGACAAAAACAACAAAGAAGCGACGCCUGAAAUAGGAGCAGCGA
.(((.((((...(((((.((((((....)))).)).))...)))...))))...............((....((((...)))).)).))). ( -23.60)
>consensus
ACGCCUUUGGAAAAUGCUACCAAGUCCACUGGCGUUGCAAAAUUCUGCGAUAAAAACAACAAAGAAGCGACGUCUGAAAUAGGAGCAACAA
......(((.....((((.((.........((((((((....((((................)))))))))))).......)))))).))) (-15.82 = -15.70 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:40 2006