Locus 6773

Sequence ID 2L_DroMel_CAF1
Location 18,929,339 – 18,929,431
Length 92
Max. P 0.883098
window10816

overview

Window 6

Location 18,929,339 – 18,929,431
Length 92
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 74.10
Mean single sequence MFE -20.95
Consensus MFE -15.40
Energy contribution -16.15
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.74
SVM decision value 0.93
SVM RNA-class probability 0.883098
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18929339 92 - 22407834
GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGACUUCACUGAGCAAAUAAAAAAAAUGUAUUCAAAUUCGCAUUUCA--------------
(((((((((.....))))))))).(((.......))).(((((.(((......)))))))).......((((((..........))))))..-------------- ( -20.80)
>DroSec_CAF1 54457 81 - 1
GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGAAUUAACUGAGCAAAAAAGA-----------AAAUUCGCAUUUUA--------------
(((((((((.....)))))))))(((((((.(....).(((((.(((......))))))))....))-----------))))).........-------------- ( -21.80)
>DroSim_CAF1 54679 80 - 1
GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGAAUUUACUGAGCAAA-AAUA-----------AAAUUCGCAUUUCA--------------
(((((((((.....))))))))).(((.......))).(((((.(((......)))))))).-....-----------..............-------------- ( -19.60)
>DroEre_CAF1 53252 100 - 1
GUGUGCAAGUUUUUGUGGCAUGCAGCUUUCAGUUGACAUUGUUACGGACUUUACUGAGCUAAA----AAAAUGGAUUCCAAUGCGG--UGGAACAUAUGAACAUAU
((((((.(((.(((((((((((((((.....)))).)).)))))))))....)))..))....----...(((..(((((......--)))))..)))..)))).. ( -21.60)
>consensus
GUGUGCCACUUUUUGUGGCAUGCAGUUUUCAGUUGACAUUGUUACGGAAUUUACUGAGCAAAAAA_A___________AAAUUCGCAUUUCA______________
(((((((((.....)))))))))...............(((((.(((......))))))))............................................. (-15.40 = -16.15 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:38 2006