| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,919,642 – 18,919,739 |
| Length | 97 |
| Max. P | 0.814365 |
| Location | 18,919,642 – 18,919,739 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.71 |
| Mean single sequence MFE | -22.35 |
| Consensus MFE | -14.94 |
| Energy contribution | -16.30 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814365 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18919642 97 + 22407834 -------ACAAAAGCUGCUAAAUGGAUGCAAUGUCACAAUUUCCCGGGAUCUCACACACUCUUCGC----------------AAAUGCCGCUCGUAUUUGCUUACGAACAUUUAGCAGUA -------......(((((((((((..((...(((.......((....))......)))......((----------------((((((.....))))))))...))..))))))))))). ( -25.62) >DroSec_CAF1 44730 96 + 1 -------ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAACUCACACACUCCUCGC----------------AAAUGCCGCUCGUAUUUGCUUACGAACAUAUAGCAGUA -------......(((((((.((((((.....))).....-...(((((..........)))..((----------------((((((.....))))))))...))..))).))))))). ( -23.90) >DroSim_CAF1 44810 96 + 1 -------ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAACUCACACACUCCUCGC----------------AAAUGCCGCUCGUAUUUGCUUACGAACAUUUAGCAGUA -------......((((((((((((((.....))).....-...(((((..........)))..((----------------((((((.....))))))))...))..))))))))))). ( -27.40) >DroEre_CAF1 43337 96 + 1 -------ACAAAAGCUUCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAUCUCACACACUCCUCGC----------------AAAUGCCACUCGUAUUUGCUUACGAACAUUUAUCAGUA -------......(((..(((((((((.....))).....-...(((((..........)))..((----------------((((((.....))))))))...))..))))))..))). ( -17.10) >DroYak_CAF1 43802 112 + 1 -------ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU-UCCCGGGAUCUCACACACUCCUCGCAAAUUCACAAAUUCGCAAAUGCCACUCGUAUUUGCUUACGAACAUUUAGCAGUA -------......(((((((((((..((...(((...(((-(..(((((..........))).))..)))).))).....((((((((.....))))))))...))..))))))))))). ( -29.00) >DroAna_CAF1 28411 89 + 1 GAAAGACGGGAAAGCCGCUCAAUGCAUGCAAUGUCACAAC-UC----------A---GCUCUGCG-----------------AAAUUCCACUCCUAUUUGCUUACAAACAUUUAGCAUCA ((......((((....((.....)).((((..((......-..----------.---))..))))-----------------...)))).........((((...........)))))). ( -11.10) >consensus _______ACGAAAGCUGCUAAAUGGAUGCAAUGUCACAAU_UCCCGGGAUCUCACACACUCCUCGC________________AAAUGCCACUCGUAUUUGCUUACGAACAUUUAGCAGUA .............((((((((((((((.....)))........................................................(((((......))))).))))))))))). (-14.94 = -16.30 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:34 2006