Locus 6768

Sequence ID 2L_DroMel_CAF1
Location 18,919,051 – 18,919,145
Length 94
Max. P 0.605727
window10808

overview

Window 8

Location 18,919,051 – 18,919,145
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 94.13
Mean single sequence MFE -13.08
Consensus MFE -12.62
Energy contribution -11.82
Covariance contribution -0.80
Combinations/Pair 1.33
Mean z-score -0.80
Structure conservation index 0.97
SVM decision value 0.15
SVM RNA-class probability 0.605727
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18919051 94 - 22407834
AUAGUAUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC
...((.(((((((((......)))))....((((((.......))))))...((..(((........)))..))..........)))))).... ( -13.10)
>DroSec_CAF1 44144 90 - 1
AU---AUAGCCGAA-AAUCCAUUUUGACCCCUUUUGACGCAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC
..---.((((((((-(.....)))))....((((((.......))))))...((..(((........)))..))..........))))...... ( -12.30)
>DroSim_CAF1 44223 91 - 1
AU---AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACGCAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC
..---.(((((((((......)))))....((((((.......))))))...((..(((........)))..))..........))))...... ( -12.50)
>DroEre_CAF1 42763 91 - 1
AU---AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC
..---.(((((((((......)))))....((((((.......))))))...((..(((........)))..))..........))))...... ( -12.50)
>DroYak_CAF1 43225 91 - 1
AU---AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAACCAAAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUGGCACAC
..---...(((((....))...(((((...((((((.......))))))...((..(((........)))..))....)))))....))).... ( -14.00)
>DroAna_CAF1 27842 91 - 1
AU---AGGGCCGAAAAAUCCAUUCUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGUAAAUAAAAGCGUCCAUUACUCAAACGCUCCCAAAC
..---.(((.((((.......(((((.................)))))......))))........(((((...........)))))))).... ( -14.05)
>consensus
AU___AUAGCCGAAAAAUCCAUUUUGACCCCUUUUGACACAGCCAGAAGUCCUGUUCGCAAAUAAAAGCGUCCAUUACUCAAACGCUAACACAC
......((((....................((((((.......))))))...((..(((........)))..))..........))))...... (-12.62 = -11.82 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:31 2006