Locus 6763

Sequence ID 2L_DroMel_CAF1
Location 18,904,533 – 18,904,628
Length 95
Max. P 0.970143
window10800

overview

Window 0

Location 18,904,533 – 18,904,628
Length 95
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 71.78
Mean single sequence MFE -28.57
Consensus MFE -6.66
Energy contribution -6.33
Covariance contribution -0.33
Combinations/Pair 1.23
Mean z-score -3.00
Structure conservation index 0.23
SVM decision value 1.65
SVM RNA-class probability 0.970143
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18904533 95 - 22407834
CUCCCGCAAGUCACCACCCACCACCUA-------CCGCCCAUCAGCGAGCG-------UCCAUGGGCCACUACCUCAUUUCCUUGAUGGCUUCGUG--GGUGUCAUAAUUU
....(....)....(((((((......-------..((((((..((....)-------)..)))))).....(((((......))).))....)))--))))......... ( -26.70)
>DroPse_CAF1 25976 94 - 1
U-CCCGGAA--CACCA---GUCU-CUC-------CCAUCCAUCAG-GAGUGCGAGACCCCCACC--CACCAUCCUCAUUUCCCUGAUGGCAUCGUGGGGGUGUCAUAAUUU
.-...((..--..)).---((..-(((-------(.........)-))).))((.((((((((.--..(((((...........)))))....)))))))).))....... ( -30.40)
>DroSec_CAF1 29728 95 - 1
CUCCCACAACCCACCACCUGCCACCCA-------CCGCCCAUCAGGGAGCG-------UCCAUGGGCACCCCCCUCAUUUCCUUGAUGGCUUCGUG--GGUGUCAUAAUUU
..................((.((((((-------(...(((((((((((..-------.....(((.....)))....)))))))))))....)))--)))).))...... ( -32.00)
>DroSim_CAF1 28914 102 - 1
CUCCCUCAACCCAGCACCUGCCGCCCGCCGCCCAUCGCCCAUCAGCGAGCG-------UAAAUGGGCCACCCCCUCAUUUCCUUGAUGGCUUCGUG--GGUGUCAUAAUUU
.............(((((..(.(((((.(((...((((......)))))))-------....)))))....((.(((......))).))....)..--)))))........ ( -28.40)
>DroEre_CAF1 27937 95 - 1
CACCCACAGCCCACAACCCACUGCCCA-------CCGCCCAGCAGCGAGCG-------CCCAUGCGCCACCCCCUCAUUUCCUUGAUGACUUCGUG--GGUGUCAUAAUUU
(((((((...........(.((((...-------.......)))).).(((-------(....)))).......(((((.....)))))....)))--))))......... ( -24.30)
>DroPer_CAF1 28034 93 - 1
U-CCCA-AA--CACCA---GUCU-CUC-------CCAUCCAUCAG-GAGUGCGAGACCCCCACC--CACCAUCCUCAUUUCCCUGAUGGCAUCGUGGGGGUGUCAUAAUUU
.-....-..--.....---((..-(((-------(.........)-))).))((.((((((((.--..(((((...........)))))....)))))))).))....... ( -29.60)
>consensus
CUCCCACAACCCACCACC_GCCACCCA_______CCGCCCAUCAGCGAGCG_______CCCAUGGGCAACCCCCUCAUUUCCUUGAUGGCUUCGUG__GGUGUCAUAAUUU
...................................((((((((((.(((.............................))).)))))))....)))............... ( -6.66 =  -6.33 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:24 2006