Locus 6759

Sequence ID 2L_DroMel_CAF1
Location 18,896,850 – 18,896,941
Length 91
Max. P 0.746845
window10794

overview

Window 4

Location 18,896,850 – 18,896,941
Length 91
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -18.25
Consensus MFE -10.84
Energy contribution -11.28
Covariance contribution 0.45
Combinations/Pair 1.14
Mean z-score -1.84
Structure conservation index 0.59
SVM decision value 0.46
SVM RNA-class probability 0.746845
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18896850 91 - 22407834
--------GAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAA--------AACACAAA
--------((((((....((((((..........))))))...))))))...((((..(........)..)))).................--------........ ( -13.70)
>DroPse_CAF1 18772 96 - 1
-AUUUGGAGAAUGCGCAUGCGAGUGUACAAUAAAAUUUGUUAAAUAUUCGCUUGGA--GCGCGGAGACAAUCGUAAACAAAAAUAUACAAA--------AAAUCAAC
-.((((......((((..((((((((((((......))))...)))))))).....--))))(....).........))))..........--------........ ( -20.70)
>DroSec_CAF1 22110 106 - 1
-UUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCUACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAAAAAAAAAAAACACAAA
-((((((.((((((....((((((..........))))))...))))))..............((.....))..............))))))............... ( -17.40)
>DroSim_CAF1 20326 101 - 1
UUUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAAA------AAACACAAA
(((((((.((((((....((((((..........))))))...))))))...((((..(........)..))))............))))))------)........ ( -20.00)
>DroEre_CAF1 19911 88 - 1
-UUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAGUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAA-C-----------------AAAACACAAA
-....((.((((((....((((.(..........).))))...)))))).))((((..(........)..))))....-.-----------------.......... ( -15.50)
>DroPer_CAF1 20632 96 - 1
-AUUUGGAGAAUGCGCAUGCGAGUGUACAAUAAAAUUUGUUAAAUAUUCGCUUGGA--GCGCGGAGACAAUCGUAAACAAAAAUAUACAAA--------AACUCAAC
-.....(((...((((..((((((((((((......))))...)))))))).....--))))(....).......................--------..)))... ( -22.20)
>consensus
_UUUUGGAGAAUGCGCAUGCGAGUGUACCAUAAAAUUCGUUAAGUAUUCGCCGCGACAGACAAGAGACAAUCGUAAAAACAAAAACCCAAA________AACACAAA
.....((.((((((....((((((..........))))))...)))))).))....................................................... (-10.84 = -11.28 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:18 2006