| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,850,230 – 18,850,338 |
| Length | 108 |
| Max. P | 0.909838 |
| Location | 18,850,230 – 18,850,338 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -27.15 |
| Consensus MFE | -21.71 |
| Energy contribution | -21.90 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.909838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18850230 108 + 22407834 -CAUUUGCAGCCAAACGACCCAAUGAGCUCAACAAUCAGCGUCCAGCAUUGGGUCACAC------ACAAACCGCACGGUCGAAACCCAAUCAGCGCUAUCGAGAGGGCUACCACU -.......((((....(((((((((.(((........)))......)))))))))....------......(((..(((....)))......)))..........))))...... ( -25.60) >DroVir_CAF1 1876 100 + 1 ------CUAGCCAAACGACCCAAUGAGCUUAA---CCAGCGUCCCACAUUGGGUCACAC------ACAAACCGCACGCAUUAAACCCAAUCAGCGUUAUCGCGAGGGCUAUCACU ------.(((((....(((((((((.(((...---..)))......)))))))))....------......(((((((..............))))....)))..)))))..... ( -28.94) >DroGri_CAF1 2023 102 + 1 -CG---ACAGCCAAACGACCCAAUGAGCUUAA---CCAGCGUCCAACAUUGGGUCACAC------ACAAACCGCACGCAUCAAACCCAAUCAGCGUUAUCGCGAGGGCUAUCAUU -.(---(.((((....(((((((((.(((...---..)))......)))))))))....------......(((((((..............))))....)))..)))).))... ( -30.14) >DroWil_CAF1 1788 108 + 1 -CACUUACAGCCAAACGACCCAAUGAGCUCAACAGUCAG------GCAUUGGGUCACAAUACACAACAAACCGCACGCAUUAAACCCAAUCAACGCUAUCGAGAGGGCUACCACU -.......((((....(((((((((.(((....)))...------.)))))))))............................................(....)))))...... ( -22.00) >DroMoj_CAF1 1988 105 + 1 -CGAUUGCAGCCAAACGACCCAAUGAGCUUAA---UCAGCGUCCGACAUUGGGUCACAC------ACAAACCGCACGGAUAAAACCGAAUCAGCGUUAUCGCGAGGGCUAUCACU -.(((.((........(((((((((.(((...---..)))......)))))))))....------.....((.(.(((......))).....(((....)))).)))).)))... ( -29.90) >DroAna_CAF1 1177 109 + 1 UAUUUUAUAGCCAAACGACCCAAUGAGCUCAACAAUCAGCGUCCAGCGUUGGGUCACAC------ACAAACCGCACGGUCGAAACCCAAUCAGCGCUACAGAGAGGGCUACCACU .......(((((....(((((((((.(((........)))......)))))))))....------......(((..(((....)))......)))..........)))))..... ( -26.30) >consensus _CA_UUACAGCCAAACGACCCAAUGAGCUCAA___UCAGCGUCCAACAUUGGGUCACAC______ACAAACCGCACGCAUGAAACCCAAUCAGCGCUAUCGAGAGGGCUACCACU ........((((....(((((((((.(((........)))......)))))))))................(((..................)))..........))))...... (-21.71 = -21.90 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:08 2006