Locus 675

Sequence ID 2L_DroMel_CAF1
Location 1,974,918 – 1,975,016
Length 98
Max. P 0.572181
window1105

overview

Window 5

Location 1,974,918 – 1,975,016
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.07
Mean single sequence MFE -24.26
Consensus MFE -15.86
Energy contribution -15.75
Covariance contribution -0.11
Combinations/Pair 1.28
Mean z-score -1.38
Structure conservation index 0.65
SVM decision value 0.08
SVM RNA-class probability 0.572181
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1974918 98 + 22407834
UGUACUACUUCUUCAAGUUCCAAUACUCGCAGGAUUUGGGCGGCACACCCCUGUUGGAAACGCCGCAGUUCUUGUAAGCAUAACGAGGAUAAUUAACU
....(((..(((((.(((......))).).))))..)))((((((((....))).(....)))))).((((((((.......))))))))........ ( -24.00)
>DroSim_CAF1 664 97 + 1
UGUACUACUUCUUCAAGUUCCAAUACUCACAGGAUCUGGGCGGCACACCCCUGCUGGAAACGCCUCAGUUCUUGUAAGCAUA-CGAGGAUAACUAACU
.........(((((.(((......))).((((((.((((((((((......))))(....)))).))).)))))).......-.)))))......... ( -25.90)
>DroEre_CAF1 768 93 + 1
UCUACUACUUCUUCAAGUUCCAAUACUCCCAGGAUCUGGGCGGCACCGCUCUGCUGGAAACACCUCAGUUCUUGUAAGCAGA-CGAGCAUA----ACU
................((((.....((..(((((.(((((.((((......))))(....)..))))).)))))..))....-.))))...----... ( -21.10)
>DroYak_CAF1 662 93 + 1
UCUACUACUUCUUCAAGUUCCAAUACUCCCAGGAUCUGGGCGGCACUGCCCUGCUGGAAACCCCUCAGUUCUUGUAAGCAUA-CGAGCGCA----UCU
................((((.....((..(((((.(((((.((((......))))(....)..))))).)))))..))....-.))))...----... ( -20.20)
>DroAna_CAF1 924 98 + 1
UUUAUUACUUCUUCAAGUUCCAAUACUCGCAGGAUCUGGGCGGUACAGCUCUUUUAGAAACGCCACAGUUUUUGUAAGUAUAUCGAAAAGGACAAAAA
............((...(((..(((((..(((((.(((((((..................)))).))).)))))..)))))...)))...))...... ( -22.17)
>DroPer_CAF1 16318 94 + 1
UUUACUUUUUCCUCAAGUUCCAAUAUUCCCAGGAGCUGGGCGGCAAUGCCCUGCUGGAGACGCCCCAGUUCCUGUAAGUAAUAGGAGAGCC----UCU
.................((((..((((..((((((((((((((((......))))(....)).)))))))))))..))))...))))....----... ( -32.20)
>consensus
UCUACUACUUCUUCAAGUUCCAAUACUCCCAGGAUCUGGGCGGCACAGCCCUGCUGGAAACGCCUCAGUUCUUGUAAGCAUA_CGAGAAUA____ACU
.........................((..(((((.((((((((((......))))(....)))).))).)))))..)).................... (-15.86 = -15.75 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:36 2006