Locus 6743

Sequence ID 2L_DroMel_CAF1
Location 18,841,684 – 18,841,780
Length 96
Max. P 0.999509
window10770

overview

Window 0

Location 18,841,684 – 18,841,780
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 93.83
Mean single sequence MFE -12.64
Consensus MFE -11.64
Energy contribution -11.68
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -2.25
Structure conservation index 0.92
SVM decision value 3.67
SVM RNA-class probability 0.999509
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18841684 96 + 22407834
CCCCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCAAAAGAUUUCGCUGGCCAAAAAAAUAAA
....(((.....................(((((....)))))................(((.....((....))....))))))............ (  -9.30)
>DroSec_CAF1 7536 96 + 1
CCCCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCGCACAUAAGAACACAAGCAAUUUUCUAAAGAUUUUGCUGGCGCAAAAAAUAAA
...((((...............................((((..(......)..))))(((((...((....))..)))))))))........... ( -15.30)
>DroSim_CAF1 5778 94 + 1
U-CCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCUAAAGAUUUUGCUGGC-CAAAAAAUAAA
.-..(((.....................(((((....)))))................(((((...((....))..))))))))-........... ( -13.10)
>DroEre_CAF1 4581 95 + 1
CCCCGCCACCCACUCACACAAACACCAUCACACGCAGAUGUGCACACAUAAGAACACAGGCAAUUUUCAAAAGAUUUUGCUGGC-CAAAAAAUAAA
....(((...............(((.(((.......))))))................(((((...((....))..))))))))-........... ( -12.50)
>DroYak_CAF1 2452 95 + 1
CCCCGCCACCAUCUCAUACAAACACCAUCACACACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCAAAAGAUUUUGCUGGC-CAAAAAAUAAA
....(((....(((........(((.(((.......))))))........))).....(((((...((....))..))))))))-........... ( -12.99)
>consensus
CCCCGCCACCCACUCACACAAACACCAUCACAUACAGAUGUGCACACAUAAGAACACAAGCAAUUUUCAAAAGAUUUUGCUGGC_CAAAAAAUAAA
....(((...............(((.(((.......))))))................(((((...((....))..))))))))............ (-11.64 = -11.68 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:57 2006