Locus 6742

Sequence ID 2L_DroMel_CAF1
Location 18,841,458 – 18,841,572
Length 114
Max. P 0.580613
window10769

overview

Window 9

Location 18,841,458 – 18,841,572
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.05
Mean single sequence MFE -16.15
Consensus MFE -12.99
Energy contribution -13.55
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.41
Structure conservation index 0.80
SVM decision value 0.09
SVM RNA-class probability 0.580613
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18841458 114 + 22407834
UGUUUUGCUGCGCGUGUUAACUAAAAACGACAAAAAGUAUAAUAAUACAGCUCAAAAUAAAAAAAUAUAGCUGAAAUUUUACAGAGAAACAAAACCUGGAAGUCACAAAUAAAA
(((((..(((.((((...........))).)................(((((................)))))........)))..)))))....................... ( -12.49)
>DroSec_CAF1 7310 114 + 1
UGUUUUGCUGCGCGUGUUAAAUAAAAACGACGAAGAGUAUAAUAAUACAGCUCAAAAUAAAAAAAUAAAGCUGAAAUUUUGCAGAGAAACAAAACCUGGAAGUCACAAAUAAAA
(((((..((((.((((((.......))).)))...............(((((................))))).......))))..)))))....................... ( -17.79)
>DroSim_CAF1 5552 114 + 1
UGUUUUGCUGCGCGUGUUAAAUAAAAACGACAAAGAGUAUAAUAGUACAGCUCAAAAUAAAAAAAUUAAGCUGAAAUUUUGCAGAGAAACAAAACCUGGAAGUCACAAAUAAAA
(((((..((((((((...........))).)................(((((................))))).......))))..)))))....................... ( -16.89)
>DroEre_CAF1 4361 108 + 1
UGUUUUGCUGCGCGUGUUAAAUAAAAACGAGGAAGAGUAUAA---UACAGCUUAAAAAAUAAA---AAAGCUGAAAUUUUGCAGAGCAACGAAACCUGGAAAUCACAAAUAAAA
.((((((.(((.(.(((.((((....((........))....---..((((((..........---.))))))..)))).)))).))).))))))................... ( -17.40)
>DroYak_CAF1 2230 110 + 1
UGUUUUGCUGCGCGAGUUAAAUAAAAACGAGAAAGAGUAUAA---UACAGCUCAAAAAAUAAA-AAAAAGCUAAAAUUUUGCAGGGAAACGAAACCUGGAAAUCACAAAUAAAA
.(((((.((((.(..(((.......)))..)...((((....---....))))..........-................)))).)))))........................ ( -16.20)
>consensus
UGUUUUGCUGCGCGUGUUAAAUAAAAACGACAAAGAGUAUAAUA_UACAGCUCAAAAUAAAAAAAUAAAGCUGAAAUUUUGCAGAGAAACAAAACCUGGAAGUCACAAAUAAAA
((((((.((((((((...........)))..................(((((................)))))......))))).))))))....................... (-12.99 = -13.55 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:56 2006