Locus 674

Sequence ID 2L_DroMel_CAF1
Location 1,972,935 – 1,973,039
Length 104
Max. P 0.813387
window1104

overview

Window 4

Location 1,972,935 – 1,973,039
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 95.03
Mean single sequence MFE -22.13
Consensus MFE -18.66
Energy contribution -18.72
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -2.11
Structure conservation index 0.84
SVM decision value 0.66
SVM RNA-class probability 0.813387
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1972935 104 + 22407834
CCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCCAACAGAACGACCAUUCGAAUGCAUCGGCACUCAAAAAAUAUGAACUUUACU
..(((((.....((((((.............)))))))))))....(((........(((......)))((.(((....))).))........)))........ ( -17.92)
>DroSim_CAF1 19381 104 + 1
ACGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCCCACAGAACGACCAUUCGAAUGCAUCGGCACUCGAAAAAUGUGAACUUUACU
..(((((.....((((((.............)))))))))))....((((((.....)).......(((((.(((....))).)))))....))))........ ( -23.62)
>DroEre_CAF1 24463 104 + 1
GCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCACACAGCACGAGCAUUCGAAUGCAUCGGCACUCAAAAAAUGUGAACUUUACU
..(((((.....((((((.............)))))))))))((((...........((.(((((((....)))).)))))...........))))........ ( -25.17)
>DroYak_CAF1 22577 104 + 1
CCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCGCUCCCACAGAACGACCAUUCGAAUGCAUCGGCACUCCAGAAAUGUGAACUUUACU
..(((((.....((((((.............)))))))))))(((((((.((.....)).)))......((.(((....))).)).......))))........ ( -21.82)
>consensus
CCGCUGGAAAUUCAACAGGCACCCACACCAACUGUUGCCAGCUCACUCACUCCCACAGAACGACCAUUCGAAUGCAUCGGCACUCAAAAAAUGUGAACUUUACU
..(((((.....((((((.............)))))))))))....((((...........((....))((.(((....))).)).......))))........ (-18.66 = -18.72 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:35 2006