Locus 6733

Sequence ID 2L_DroMel_CAF1
Location 18,818,981 – 18,819,072
Length 91
Max. P 0.965105
window10752

overview

Window 2

Location 18,818,981 – 18,819,072
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 86.43
Mean single sequence MFE -26.60
Consensus MFE -20.22
Energy contribution -20.66
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -2.50
Structure conservation index 0.76
SVM decision value 1.58
SVM RNA-class probability 0.965105
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18818981 91 + 22407834
AACACGCAUACAUCGGCUGAUAAUAAAUCGGCAGACUUGUGCUUGUCUUGAUAGACUUUCUCUACAUCCGGUAGUUGAGUCUCGUGUGCAC
.....((((((((((((((((.....))))))((((........))))))))((((((...((((.....))))..)))))).)))))).. ( -30.50)
>DroSec_CAF1 81537 83 + 1
AUCACGCAUACAUCGACUGAUAAUGAGUCGGCAGACUU------GUCUUAAUAGACUUU--CUACAGCCGGUAGUUAUGUCUCGUGUGCAC
.....((((((...(((..(((((...((((((((...------((((....))))..)--))...)))))..))))))))..)))))).. ( -24.20)
>DroSim_CAF1 84128 83 + 1
AUCACGCAUACAUCGACUGAUAAUGAGUCGGCAGACUU------GUCUUAAUAGACUUU--CUACAGCCGGUAGUUGGGUCUCGUGUGCAC
.....((((((..(((((.......)))))(.((((((------((((....))))...--((((.....))))..))))))))))))).. ( -25.40)
>DroEre_CAF1 81984 83 + 1
ACCACGCAUACUUCGGCUGAUAAUGAAUCGGCAGACUU------GUCUUAAUAGGCUUU--CUAAUGCCGGUAGUUCAUUCUCGUGAGCAC
(((..((((......((((((.....))))))(((...------((((....))))..)--)).)))).))).((((((....)))))).. ( -22.40)
>DroYak_CAF1 82548 83 + 1
ACCACGCGUGCAUCGGCUGAUAAUGAAUCGGCAGACUU------GUCUUAAUAGACUUU--CUACUGCCGGUAGUUAAGUCUCGUGUGCGC
.....(((..(((.((((..((((..((((((((....------((((....))))...--...)))))))).))))))))..)))..))) ( -30.50)
>consensus
ACCACGCAUACAUCGGCUGAUAAUGAAUCGGCAGACUU______GUCUUAAUAGACUUU__CUACAGCCGGUAGUUAAGUCUCGUGUGCAC
.....((((((....((((((.....))))))((((........))))....((((((...((((.....))))..)))))).)))))).. (-20.22 = -20.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:41 2006