| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,748,629 – 18,748,733 |
| Length | 104 |
| Max. P | 0.505620 |
| Location | 18,748,629 – 18,748,733 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.55 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -10.78 |
| Energy contribution | -10.62 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.39 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.505620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18748629 104 + 22407834 AAGGCGAUCUUGGCUUCUAAUACUCUUGUGGGUAACGAAACUUUGAGAUGAGCUAUUCUCGA--AAU-----AAGGG-CGAGAUGUU-AGGAAACA-------UAUAUGUAUGUUCCAAA ..(((.((((((.(((....(((((....))))).......(((((((........))))))--)..-----.))).-)))))))))-.((((.((-------((....))))))))... ( -27.10) >DroSec_CAF1 12215 101 + 1 AAGGCGAUCUAGGCUUCUAAUACCCUAGUGGGUAACGAAACUUUGAGAUGAGCUAUUCUCGA--AAU-----AAGGGACAAGUUGUU-UGGAAACA-------UAUAU----GUUUCAAA .((((((.((.(.((..((.(((((....))))).......(((((((........))))))--).)-----)..)).).)))))))-).((((((-------....)----)))))... ( -23.80) >DroSim_CAF1 12435 101 + 1 AAGGCGAUCUUGGCUUCUCAUACCCUUGUGGGUAACGAAACUUUGAGAUGAGCUAUUCUCGA--AAG-----AAGGGACAAGUUGUU-AGGAAACA-------UAUAU----GUUUCAAA ..(((((.((((.((..((.(((((....))))).......(((((((........))))))--).)-----)..)).)))))))))-..((((((-------....)----)))))... ( -29.70) >DroEre_CAF1 12564 111 + 1 AAGGCGAUCUUGGCUCCUAAUACUCCAGUGGGUAAGGAAACUUGUGGAUGAGCUUUCCACACGGAGUUCUAGUGGGGUUAAGGUAUUCAUAAAAUAAAGUAGUAGUAA----GCC----- ..(((.(((((((((((....(((((.......(((....)))(((((.......)))))..)))))......)))))))))))........................----)))----- ( -33.41) >DroYak_CAF1 12255 109 + 1 AAGGCGAUCUUGGCUUCUCAUACUCUAAUGGGUGAAGAAACUAUUAGACGCGCUUUUCACACAGAAUUCUAGAGAGAUUGAGGUAUUCUGCAAAUG-------UGUAA----GACCAAAU ...(((.((((((.((((..(((((....))))).)))).)))..)))))).(((..(((((((((((((.((....)).))).))))))....))-------)).))----)....... ( -23.00) >consensus AAGGCGAUCUUGGCUUCUAAUACUCUAGUGGGUAACGAAACUUUGAGAUGAGCUAUUCUCGA__AAU_____AAGGGACAAGGUGUU_AGGAAACA_______UAUAU____GUUCCAAA ..(((.((((.((.(((...(((((....)))))..))).))...))))..))).................................................................. (-10.78 = -10.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:16 2006