Locus 6709

Sequence ID 2L_DroMel_CAF1
Location 18,740,944 – 18,741,034
Length 90
Max. P 0.534975
window10715

overview

Window 5

Location 18,740,944 – 18,741,034
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 84.90
Mean single sequence MFE -28.68
Consensus MFE -22.41
Energy contribution -23.97
Covariance contribution 1.56
Combinations/Pair 1.09
Mean z-score -1.72
Structure conservation index 0.78
SVM decision value 0.00
SVM RNA-class probability 0.534975
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18740944 90 - 22407834
GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUUGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCA---GCGGCGGCAACAACG
........((((((...((.......))....(((((((((...))))...((((((......))).)))..)))---))))))))....... ( -27.70)
>DroSec_CAF1 4582 75 - 1
--------------CCCGCAUUUUGCGCAGAUGUGGCAGCCCUCGGCUAACUUUACACACAUUUGUCGCAUCGCA----CGGCGGCAACAACG
--------------.((((....((((((((((((..((((...)))).........)))))))).)))).....----..))))........ ( -23.70)
>DroSim_CAF1 4725 90 - 1
GCCAUUACGCCGCCCCCGCAUUUUGCGCAGAUGUGGCAGCCCUCGGCUAACUGUACUCACAUUUGUCGCAUCGCA---GCGGCGGCAACAACG
........((((((.(.((....(((((((((((((.((((...))))........))))))))).))))..)).---).))))))....... ( -34.10)
>DroEre_CAF1 4690 90 - 1
GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUGGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCA---GCGGCGGCAACAACG
........((((((...((.......)).((((((((((((...))))...(((....)))...))))))))...---..))))))....... ( -30.60)
>DroYak_CAF1 4587 90 - 1
GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUGGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCU---GCGGCGGCAACAACG
........((((((..(((((((.....)))))))(((((...((((.((.(((....))).))))))....)))---))))))))....... ( -32.30)
>DroAna_CAF1 4013 86 - 1
-------UGCCGCCCCCGCAAGUGUUGCAGAUGCCACAGCCCUCGGCUAACUGUACACACAAUUGUCGCAUCGCAUAAGCUGCAGCAACAAGC
-------..........((...((((((.(((((.((((((...))))...(((....)))...)).)))))(((.....))).)))))).)) ( -23.70)
>consensus
GCCAUUACGCCGCCCCCGCAUUUUCCGCAGAUGUGGCAGCCCUCGGCUAACUGUACACACAUUUGUCGCAUCGCA___GCGGCGGCAACAACG
........((((((...((.......)).((((((((((((...))))...(((....)))...))))))))........))))))....... (-22.41 = -23.97 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:08 2006