| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,969,226 – 1,969,336 |
| Length | 110 |
| Max. P | 0.665401 |
| Location | 1,969,226 – 1,969,336 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.74 |
| Mean single sequence MFE | -43.07 |
| Consensus MFE | -33.06 |
| Energy contribution | -33.90 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1969226 110 - 22407834 AACGGGGCCACUCGAGGCGGCGAGUGAGUUGCCCCGGGCGGUGGCAA---AGGAUC-------AGACUCAGACGUGUGUGAGUGUGAAAUGAAAUGGAAAGUGUCCUUACAAGCUGCCAA ..((((((((((((......))))))....))))))((((((....(---((((((-------(.(((((.(....).))))).))).......(....)...)))))....)))))).. ( -45.70) >DroSec_CAF1 11686 110 - 1 AACGGGGCCACUCGAGGCGGCGAGUGAGUUGCCCCGGGCGGUGGCAA---AGGAUC-------AGACUCAGACGUGUGCGAGUGUGAAAUGAAACGGAAAGUGUCCUUACAAGCUGCCAA ..((((((((((((......))))))....))))))((((((....(---((((((-------(.((((..........)))).)))......((.....)).)))))....)))))).. ( -43.70) >DroSim_CAF1 15864 110 - 1 AACGGGGCCACUCGAGGCGGCGAGUGAGUUGCCCCGGGCGGUGGCAA---AGGAUC-------AGACUCAGACGUGUGUGAGUGUGAAAUGAAACGGAAAGUGUCCUUACAAGCUGCCAA ..((((((((((((......))))))....))))))((((((....(---((((((-------(.(((((.(....).))))).)))......((.....)).)))))....)))))).. ( -47.10) >DroEre_CAF1 20832 107 - 1 AACGGGGCCACUCGAGG---CGAGUGAGCUGCCCCGGGCGGUGGCAA---AGGAUC-------AGACCCAGACGUGUGUGAGUGUGAAAUGAAACGGAAAGUGUCCUUACAAGCUGCCAA ..((((((((((((...---))))))....))))))((((((....(---((((((-------(.((.((.(....).)).)).)))......((.....)).)))))....)))))).. ( -40.70) >DroYak_CAF1 18766 114 - 1 AACGGGGCCACUCGAGG---CGAGUGAGUUGCCCCGGGCGGUGGCAA---AGGAUCAAAACCCAGACUCAGACGUGUGUGAGUGUGAAAUGAAACGGAAAGUGUCCUUACAAGCUGCCAA ..((((((((((((...---))))))....))))))((((((....(---(((((.......((.(((((.(....).))))).)).......((.....))))))))....)))))).. ( -44.80) >DroAna_CAF1 42567 103 - 1 AACCGGGCCACUCGAGGAGGCCAGUGAGUUGCCCCUGAGGGCGGCCAACAAGGAUC-------------AGGCGUGU----GUGCGAAAUGAAAUGGAAAGUGCCCUCAGAAGCUGCCAA ....((((.(((((..(....)..))))).))))(((((((((.((.....)).((-------------(..(((..----..)))...))).........))))))))).......... ( -36.40) >consensus AACGGGGCCACUCGAGGCGGCGAGUGAGUUGCCCCGGGCGGUGGCAA___AGGAUC_______AGACUCAGACGUGUGUGAGUGUGAAAUGAAACGGAAAGUGUCCUUACAAGCUGCCAA ..((((((((((((......))))))....))))))...((((((.....(((((............(((.((........)).)))......((.....))))))).....)))))).. (-33.06 = -33.90 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:29 2006