Locus 6680

Sequence ID 2L_DroMel_CAF1
Location 18,717,740 – 18,717,860
Length 120
Max. P 0.999472
window10658

overview

Window 8

Location 18,717,740 – 18,717,860
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.67
Mean single sequence MFE -29.79
Consensus MFE -29.95
Energy contribution -29.79
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -2.34
Structure conservation index 1.01
SVM decision value 3.63
SVM RNA-class probability 0.999472
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18717740 120 + 22407834
UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA
..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09)
>DroSec_CAF1 10508 120 + 1
UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA
..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09)
>DroSim_CAF1 8932 120 + 1
UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGAUCAACCAGUUAACUCAGCUCUGGCUAA
..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -28.59)
>DroEre_CAF1 10657 120 + 1
UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUAUUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCGCUGGCUAA
..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09)
>DroYak_CAF1 10661 120 + 1
UCGCCGCUGGCUGACUGUAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA
..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... ( -30.09)
>consensus
UCGCCGCUGGCUGACUGCAUCCUGUUGUUUGUUAUAGUUUGCGAUGUUUUAUUUCUUACUUUAUCUUUAUAUAACUAGCACACAUGCAGACGACCAACCAGUUAACUCAGCUCUGGCUAA
..((((((((.((((((......(((((((((....((.(((...(((.(((................))).)))..))).))..)))))))))....)))))).).))))...)))... (-29.95 = -29.79 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:14 2006