Locus 6663

Sequence ID 2L_DroMel_CAF1
Location 18,693,711 – 18,693,804
Length 93
Max. P 0.963028
window10626

overview

Window 6

Location 18,693,711 – 18,693,804
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 75.42
Mean single sequence MFE -21.14
Consensus MFE -11.66
Energy contribution -11.97
Covariance contribution 0.31
Combinations/Pair 1.23
Mean z-score -2.20
Structure conservation index 0.55
SVM decision value 1.55
SVM RNA-class probability 0.963028
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18693711 93 - 22407834
CAAUCUAAACGGUAUUCGUCCACCAGCAGCAAGUGAUGAUGGAUUAGCCAACCUAUA---AUACA-----UAGUAAAAUUAAUUAGGGCUCU---AGCACUAAU
..........(((((((((((((.........)))..)))))))..)))...((((.---....)-----)))........(((((.((...---.)).))))) ( -13.60)
>DroGri_CAF1 21706 94 - 1
CAAUCCAAACGAUACUCAUCGACCAGCAACAAAUGUUGAUGGAUUAACCAACCUAUAUGGUUAAUA----UACAAAUAUUGUUUAU---AAUUGUAU---UUAU
((((..((((((((........(((.((((....)))).)))((((((((.......)))))))).----......))))))))..---.))))...---.... ( -19.90)
>DroSec_CAF1 20691 93 - 1
CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA---AUACA-----UAGAAAAAUUAUUUAGGGCUAU---AGCACAAAU
.(((((....(((....(((((.(((((.....))))).)))))..)))...((((.---....)-----)))............)))))..---......... ( -24.50)
>DroSim_CAF1 18997 93 - 1
CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA---AUACA-----UAGAAAAAUUAAUUAGGGCUAU---AGCACAAAU
.(((((....(((....(((((.(((((.....))))).)))))..)))...((((.---....)-----)))............)))))..---......... ( -24.50)
>DroEre_CAF1 18960 85 - 1
CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAGUGCUGAUGGAUUAGCCAACCUAUG---AUAAU-----UAGAAACAUGUAUUAGGCCUUG---A--------
.....((((.(((....(((((.(((((.....))))).)))))..)))..((((..---.....-----.............)))).))))---.-------- ( -19.85)
>DroYak_CAF1 19173 91 - 1
CAGUCUAAGCGGUAUUCGUCCACCAUCAGCAAGUGCUGAUGGAUUAGCCAACCUAUGU--AUAAUAGAAAGAGAAAAAUGAGCUAAGUCUUU---A--------
.((.((.(((..((((..(((.((((((((....))))))))..........((((..--...))))...).))..)))).))).)).))..---.-------- ( -24.50)
>consensus
CAGUCCAAGCGGUAUUCGUCCACCAGCAGCAAAUGCUGAUGGAUUAGCCAACCUAUA___AUAAA_____UAGAAAAAUUAAUUAGGGCUAU___AG____AAU
..........(((....(((((.(((((.....))))).)))))..)))....................................................... (-11.66 = -11.97 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:44 2006