| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,688,386 – 18,688,506 |
| Length | 120 |
| Max. P | 0.635250 |
| Location | 18,688,386 – 18,688,506 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.83 |
| Mean single sequence MFE | -40.78 |
| Consensus MFE | -29.68 |
| Energy contribution | -28.88 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18688386 120 + 22407834 CGAAAACAAUGUCUGCCUUUGGCUUCCUGCGGGUGCGAACUCGUGGAUGCAGGGGAUAGACAUUUGGCGGAUACGUGCACUGGUUCGGAUCGUCGUGAUCCAGAUUGGCCAUAGUUUUAG ..(((((((((((((((((((.(.(((.((((((....))))))))).))))))).))))))))((((.(((..(.((....)).)(((((.....)))))..))).))))..))))).. ( -44.50) >DroVir_CAF1 16926 120 + 1 UAAAGACAAUGUCUGCCUUGGGCUUGCGGCGAGUGCGUACACGCGGAUGCAGCGGAUAUACAUUGGGCGGAUAUGUAAACUGAUUGGGAUCAUCAUGAUCCAGAUUGGCCAUUGUCUUGG ..((((((((((((((((((.(..(((.(((..((((....))))..))).)))..)...))..)))))))........(..(((.(((((.....))))).)))..).))))))))).. ( -43.30) >DroGri_CAF1 16684 120 + 1 UGAAGACAAUGUCUGCUUUGGGUUUGCGUCGGGUGCGGACACGUGGAUGCAAUGGAUAUACAUUGGGCGGAUAAGUGAACUGAUUGGGGUCAUCGUGAUCGAGAUUGGCCAUUGCCUUGG ..(((.(((((((((((....(((..(((.(........))))..))).(((((......)))))))))))........(..(((..((((.....))))..)))..).))))).))).. ( -32.00) >DroWil_CAF1 18118 120 + 1 CAAAGACUAUAUCCGCUUUGGGCUUGCGACGAGUACGCACUCGUGGAUGCAGGGGAUAGACAUUGGGCGGAUAUGAGCUUUGAUUGGGAUCAUCGUGAUCCAAAUUCGCCAUAGCCUUGG (((((..(((((((((((....((((((((((((....))))))...))))))(......)...)))))))))))..)))))....(((((.....))))).......(((......))) ( -40.30) >DroMoj_CAF1 16252 120 + 1 UGAAUACAAUAUCCGCCUUGGGCUUGCGUCGUGUGCGCACGCGCGGAUGCAAUGGAUAUACAUUGGGCGGGUAUGUGAACUGAUUGGGAUCAUCGUGAUCCAGAUUGGCCAUUGUCUUGG ....((((.(((((((((.......(((((.(((((....))))))))))((((......)))))))))))))))))..(..(((.(((((.....))))).)))..)(((......))) ( -44.80) >DroAna_CAF1 13589 120 + 1 CAAACACUAUGUCCGCCUUGGGCUUCCUGCGAGUGCGUAUUCUCGGAUGCAACGGAUAAACAUUUGGCGGAUAUGUGCACUGGUUUGGAUCGUCAUGGUCCAAGUUAGCCAUCGUCUUCG ....(((.(((((((((.((....(((.((....))(((((....)))))...)))....))...))))))))))))..((..((((((((.....))))))))..))............ ( -39.80) >consensus CAAAGACAAUGUCCGCCUUGGGCUUGCGGCGAGUGCGCACUCGCGGAUGCAACGGAUAUACAUUGGGCGGAUAUGUGAACUGAUUGGGAUCAUCGUGAUCCAGAUUGGCCAUUGUCUUGG ..(((((((((((((((....((...(.((((((....)))))).)..))...(......)....))))))).......((((((.(((((.....))))).))))))..)))))))).. (-29.68 = -28.88 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:41 2006