Locus 666

Sequence ID 2L_DroMel_CAF1
Location 1,965,710 – 1,965,816
Length 106
Max. P 0.741684
window1091

overview

Window 1

Location 1,965,710 – 1,965,816
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.95
Mean single sequence MFE -27.57
Consensus MFE -21.93
Energy contribution -21.97
Covariance contribution 0.03
Combinations/Pair 1.28
Mean z-score -2.30
Structure conservation index 0.80
SVM decision value 0.45
SVM RNA-class probability 0.741684
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1965710 106 - 22407834
-------------UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUUUCAGUUUGUUUUUAAUUGAAAAUAACAUUUUUCCAA-AACAAACU
-------------.......(((((((((.....)))))))))..(((((((((((..........)))).)))))))(((((((((.....(((((......))))).))-))))))). ( -29.90)
>DroSec_CAF1 8174 106 - 1
-------------UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGUUUUUAAUUGAAAAUUACAUUUUUCCAA-AACAAACU
-------------....((((((((((((.....)))))))))...)))(((((((.(((.....))).))).))))((((((((((.....(((((......))))).))-)))))))) ( -29.40)
>DroSim_CAF1 12320 106 - 1
-------------UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGUUUUUAAUUGAAAAUUACAUUUUUCCAA-AACAAACU
-------------....((((((((((((.....)))))))))...)))(((((((.(((.....))).))).))))((((((((((.....(((((......))))).))-)))))))) ( -29.40)
>DroEre_CAF1 17299 111 - 1
AC--------GCGUACCUUUGCUGUUUGCGCUGGCCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGCAUUUAAUUGAAAAUUACAUUUUUCCAA-AACAAACU
..--------((((.(((((((((((((.(....))))))))).....)))))))))...(((((((((.(((....)))..))........(((((......)))))..)-)))))).. ( -23.50)
>DroYak_CAF1 15219 120 - 1
GUGUGUUUGUGUGUAUCUUUGCUAUUUGCGCUGGCCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGCUUUUAAUUGAGAAUUACAUUUUUCCAAAAACAAACU
....((((((.....(((((((((((((.(....)))))))))...)))))(((((.(((.....))).)))(((((((((.......)))))))))..........))....)))))). ( -30.70)
>DroAna_CAF1 38684 101 - 1
-----------------UUCACUGUUUGCUCUGGGCAAAUAGUUUUAAAGAGGGCGCCAAUUUGUUUGCCGUUUGUCAGUUUGU-UUUAAUUGAAAAUUACAUUUUUUAAA-GAAGGAUU
-----------------((((((((((((.....)))))))))(((((((((((((..........))))((...((((((...-...)))))).....)).)))))))))-)))..... ( -22.50)
>consensus
_____________UACCUUCGCUAUUUGCGCCGGGCAAAUAGUUUUGAAGAGGGCGCCAAUUUGUUUGCCGCUUCUCAGUUUGUUUUUAAUUGAAAAUUACAUUUUUCCAA_AACAAACU
....................(((((((((.....)))))))))......(((((((.(((.....))).))).))))((((((((.......(((((......)))))....)))))))) (-21.93 = -21.97 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:23 2006