Locus 6659

Sequence ID 2L_DroMel_CAF1
Location 18,686,407 – 18,686,516
Length 109
Max. P 0.850674
window10622

overview

Window 2

Location 18,686,407 – 18,686,516
Length 109
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 80.61
Mean single sequence MFE -41.97
Consensus MFE -30.12
Energy contribution -31.43
Covariance contribution 1.31
Combinations/Pair 1.30
Mean z-score -1.89
Structure conservation index 0.72
SVM decision value 0.79
SVM RNA-class probability 0.850674
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18686407 109 - 22407834
GGAGGCAGCGGCUGACCAUAGUCGCUGAUGUCCAUCGAUGCCAACGGAGCUCCAUUCCGAUCGAAGGCCGGAGCCACAGAAGCUCCACUUCUGUCGAAGGUC---GCAUUUA
(((.((((((((((....))))))))).).)))...(((((...(((((.....)))))......((((....(.(((((((.....))))))).)..))))---))))).. ( -41.50)
>DroSec_CAF1 13385 109 - 1
GGAGGCAGCGGCUGACCAUAGUCGCUGAUGUCCAUCGAUGCCAACGGAGCUCCAUUUCGAUCGAAGGCCGGAGCCACAGGAGCUCCAGUUCCGUCGAAGGUC---GCAUUCA
(((.((((((((((....))))))))...(.((.((((((..(((((((((((..(((....)))(((....)))...)))))))).))).)))))).)).)---)).))). ( -47.40)
>DroSim_CAF1 11656 109 - 1
GGAGGCAGCGGCUGACCAUAGUCGCUGAUGUCCAUCGAUGCCAACGGAGCUCCAUUCCGAUCGAAGGCCGGAGCCACAGGAGCUCCAGCUCCGUCGAAGGUC---GUAUUCA
.(((.(((((((((....)))))))))(((.((.((((((.....((((((((.(((.....)))(((....)))...)))))))).....)))))).)).)---)).))). ( -46.60)
>DroEre_CAF1 11449 109 - 1
GCAGGCAGCGGCUGACCGUAGUCACUGAUGUCCAUCGAUGCCAAAGGAGCUCCGUUCCGAUCGAAGGCUGGAGCCACAGGAGCUCCAUUUCGGUCGAAUGUA---GCAUUCA
...((((.(((..(((..(((...)))..)))..))).))))...((((((.(((((.((((((((..(((((((....).))))))))))))))))))).)---)).))). ( -40.40)
>DroYak_CAF1 11661 109 - 1
GGUGGCAGCGGCUGACCGUAGUCACUGAUGUCCAUCGAUUCCAACGGAGCUCCGUUCCGAUCGAAGGCUGGAACCACAGGAGCUCCAUUUCGAUCGACGGUA---GCAUUCA
((((((.((((....)))).))))))(((((((.((((((..((.((((((((((((((..(....).))))))....)))))))).))..)))))).))..---))))).. ( -46.60)
>DroAna_CAF1 11566 103 - 1
GGCGGUAGUGGUUGCCCGUAAUCGCUCAUGUCU---------AAUGGACCGCCAUUCCGGUCAUAAGAAGCAGCUAUGGGUGCUCCAUUUCUAUCAAAAGCAGGGGCGUUUA
(..((.(((((..(((((((...(((....(((---------.(((.((((......))))))).)))...))))))))))...))))).))..)....((....))..... ( -29.30)
>consensus
GGAGGCAGCGGCUGACCAUAGUCGCUGAUGUCCAUCGAUGCCAACGGAGCUCCAUUCCGAUCGAAGGCCGGAGCCACAGGAGCUCCAUUUCCGUCGAAGGUA___GCAUUCA
(((.((((((((((....))))))))).).))).((((((.....((((((((.(((((..(....).))))).....)))))))).....))))))............... (-30.12 = -31.43 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:40 2006