Locus 664

Sequence ID 2L_DroMel_CAF1
Location 1,965,174 – 1,965,271
Length 97
Max. P 0.909260
window1087

overview

Window 7

Location 1,965,174 – 1,965,271
Length 97
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 80.28
Mean single sequence MFE -27.91
Consensus MFE -19.62
Energy contribution -19.22
Covariance contribution -0.40
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.70
SVM decision value 1.06
SVM RNA-class probability 0.909260
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1965174 97 - 22407834
AACUGUGUACAUAUUUCGCGUGCA--UUUCGUUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUUGG-------GC
..(((((.......((((((((((--.......))).)))))))...........))))).((.((...((.((((((....)))))).))...)).-------)) ( -26.37)
>DroSec_CAF1 7639 97 - 1
AACUGUGUACAUAUUUCGCGUGCA--UUUCAGUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUUGG-------GC
((((((((((.........)))))--...)))))((((((((....((.((.....)).)).))))))))((((((((....))))))...))....-------.. ( -28.30)
>DroSim_CAF1 11791 97 - 1
AACUGUGUACAUAUUUCGCGGGCA--UUUCGGUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUAGG-------GC
..(((((.........)))))((.--...((((.(((.(((((((.......)))))))...)))))))((.((((((....)))))).))))....-------.. ( -27.80)
>DroEre_CAF1 16812 106 - 1
AACUGUGUACAUAUUUCCCCAGCAUUUUUUGGCUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGGGCAGAUACGAAAGUAUCUGUCGGCUGCAUCUUGGCC
..............................((((((..(((((((.......)))))))..))(((.(.(((((((((....))))))))).).))).....)))) ( -34.10)
>DroYak_CAF1 14702 77 - 1
AAC----------------------AUUUCGGCUGCGCUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUUGGCUUGC-------AC
...----------------------.........((.((((((((.......)))))))).))(((..((..((((((....))))))...)).)))-------.. ( -23.00)
>consensus
AACUGUGUACAUAUUUCGCGUGCA__UUUCGGUUGCGAUGUGAAUUUCAAUUAUUUAUAGAGCGCAUCGCGCAGAUACGAAAGUAUCUUCGGCUUGG_______GC
.................((..............((((.(((((((.......)))))))...))))...((.((((((....)))))).))))............. (-19.62 = -19.22 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:20 2006