Locus 6624

Sequence ID 2L_DroMel_CAF1
Location 18,616,726 – 18,616,837
Length 111
Max. P 0.743737
window10567

overview

Window 7

Location 18,616,726 – 18,616,837
Length 111
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 91.23
Mean single sequence MFE -23.71
Consensus MFE -20.19
Energy contribution -20.98
Covariance contribution 0.79
Combinations/Pair 1.11
Mean z-score -2.17
Structure conservation index 0.85
SVM decision value 0.46
SVM RNA-class probability 0.743737
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18616726 111 - 22407834
UGUGCAAACAUAAUAUGUGUCGCAU---UUAUGCUGUCAAUAUGAUUGAAUGCUCAUAAUAUUCAUAGAUUACGUGUUUACAUUUUGUGCUAAACAUUUGAAACAUACUCCCAU
(((.....(((((.(((((..((((---.((..((((.(((((...(((....)))..))))).))))..)).)))).))))).)))))....))).................. ( -17.80)
>DroSec_CAF1 94184 114 - 1
UGUGCAAACAUAAUAUGUAUCGCAUGUAUUACGCUGUCAAUAUGAUUGAAUACUCGAAAUAUUAAUAGAUUACGUGUUUACAUUUUAUGCUAAACAUUUGCAUAAUACUUCCAU
(((((((((((((.(((((..(((((((.....((((.(((((..((((....)))).))))).))))..))))))).))))).))))).......)))))))).......... ( -27.41)
>DroSim_CAF1 95117 114 - 1
UGUGCAAACAUAAUAUGUAUCGCAUGUAUUACGCUGUCAAUAUGAUUGAAUGCUCGAAAUAUUAAUAGAUUACGUGUUUGCAUUUUAUGCUAAACAUUUGCAUCAUACUUCCAU
.((((((((((((.(((((..(((((((.....((((.(((((..((((....)))).))))).))))..))))))).))))).))))).......)))))))........... ( -25.91)
>consensus
UGUGCAAACAUAAUAUGUAUCGCAUGUAUUACGCUGUCAAUAUGAUUGAAUGCUCGAAAUAUUAAUAGAUUACGUGUUUACAUUUUAUGCUAAACAUUUGCAUCAUACUUCCAU
.((((((((((((.(((((..(((((((.....((((.(((((...(((....)))..))))).))))..))))))).))))).))))).......)))))))........... (-20.19 = -20.98 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:48 2006