Locus 662

Sequence ID 2L_DroMel_CAF1
Location 1,963,612 – 1,963,706
Length 94
Max. P 0.989592
window1084

overview

Window 4

Location 1,963,612 – 1,963,706
Length 94
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 89.78
Mean single sequence MFE -32.24
Consensus MFE -32.96
Energy contribution -32.72
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.60
Structure conservation index 1.02
SVM decision value 2.17
SVM RNA-class probability 0.989592
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1963612 94 - 22407834
UCGGCACACCGACGCAGGAUCCUCGUGA-----AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCG------------CCGCCGAAAG
(((((.....(((((..((((((((...-----..)).))))))..))))).......((((...((((.....))))..)))).....------------..)))))... ( -30.90)
>DroSec_CAF1 6058 94 - 1
UCGGCACACCGACGCAGGAUCCUCGUGA-----AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCACGG------------CCGCCGAAAG
(((((...(((((((..((((((((...-----..)).))))))..))))).......((((...((((.....))))..))))...))------------..)))))... ( -31.90)
>DroSim_CAF1 10231 94 - 1
UCGGCACACCGACGCAGGAUCCUCGUGA-----AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCACGG------------CCGCCGAAAG
(((((...(((((((..((((((((...-----..)).))))))..))))).......((((...((((.....))))..))))...))------------..)))))... ( -31.90)
>DroEre_CAF1 15210 105 - 1
UCGGCACACCGACGCAGGAUCCUUGCG------AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCGCCAUCGCCACCGCCGCCGAAAG
(((((.....(((((..((((((.((.------...))))))))..))))).......((((...((((.....))))..))))...................)))))... ( -32.10)
>DroYak_CAF1 13096 99 - 1
UCGGCACACCGACGCAGGAUCCUUGCGCGUCGCGUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCG------------CCGCCGAAAG
(((((.....(((((..((((((.(((((...)).)))))))))..))))).......((((...((((.....))))..)))).....------------..)))))... ( -34.40)
>consensus
UCGGCACACCGACGCAGGAUCCUCGUGA_____AUCGCAGGAUCGCGUGUCAACAACCGUAGAAAGAAAAAGCAUUUCCGCUGCCAUCG____________CCGCCGAAAG
(((((.....(((((..((((((.(((........)))))))))..))))).......((((...((((.....))))..))))...................)))))... (-32.96 = -32.72 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:17 2006