| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,607,765 – 18,607,885 |
| Length | 120 |
| Max. P | 0.505389 |
| Location | 18,607,765 – 18,607,885 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.16 |
| Mean single sequence MFE | -37.58 |
| Consensus MFE | -24.33 |
| Energy contribution | -26.42 |
| Covariance contribution | 2.09 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18607765 120 + 22407834 GAAUCCAUGGUGUCCCAAGCCCUUUUGUUUGAUGGACAGAUUGUAGAGCGUUAGGGUGAGCACCAGCAGCCAAGGUAUCCUUUGGCGCACGAUCACUUCCUUAAUGGGUUCUAGAUCUGA (((((((((((((.....(((((..(((((.....((.....)).)))))..)))))..))))).((.(((((((....)))))))))...............))))))))......... ( -40.70) >DroVir_CAF1 124867 114 + 1 AUAGCCAUGAUGGCUCAGGCCCUUCGACUUUAUGGACAAAUUGUAGAGCGUCAGCGUCAGCACCAGCAGCCAGGGUAUGCGCUGGCGUACGAAACGCUCCUUG---GGCACGUCUUC--- ........(((((((((((.((...........))..........((((((...((((.((....)).(((((.(....).)))))).)))..))))))))))---))).))))...--- ( -38.40) >DroSec_CAF1 85327 120 + 1 GAAUCCAUGGUGUCCCAAGCCCUUUUGUUUGAUGGACAGAUUGUAGAGCGUUAGGGUGAGCACCAGCAGCCAAGGUAUCCUUUGGCGCACGAUCACUUCUUUAAUGGGUUCUAUAUCUGU (((((((((((((.....(((((..(((((.....((.....)).)))))..)))))..))))).((.(((((((....)))))))))...............))))))))......... ( -40.70) >DroSim_CAF1 85778 120 + 1 GAAUCCAUGGUGUCCCAAGCCCUUUUGUUUGAUGGACAGAUUGUAGAGCGUUAGGGUGAGCACCAGCAGCCAAGGUAUCCUUUGGCGUACGAUCACUUCUUUAAUGGGUUCUAUAUCUGU ((((((((..((((((((((......)))))..)))))(((((((..((.....(((....))).)).(((((((....))))))).))))))).........))))))))......... ( -40.80) >DroYak_CAF1 85042 120 + 1 GAAUCCAUGGUGACCCAAACCCUUUUGUUUGAUGGACAGAUUGUAGAGCGUUAGGGUGAGCACCAACAGCCAAGGUAUCCUUUGCCGCAGGAUCACUUCCUUUAUGGGUUCUAAGGCCGU ((((((((((((((((.(((.((((.(((((.....)))))...)))).))).))))...))))....((...((((.....))))))((((.....))))..))))))))......... ( -35.00) >DroAna_CAF1 78308 119 + 1 GAAUCCAUGGUGUCCCAGUCCCUUUUGUUUGAUGGACAGAUUGUAGAUCGUCAACGUGAUCACCAGUAACCAGGGUAUUUUCUGUCUCACACAGAUCUCCUUCACGGUAUCUGGAGA-GU ..((((.((((......((((.((......)).))))..((((..(((((......)))))..)))).))))))))....(((((.....)))))(((((............)))))-.. ( -29.90) >consensus GAAUCCAUGGUGUCCCAAGCCCUUUUGUUUGAUGGACAGAUUGUAGAGCGUUAGGGUGAGCACCAGCAGCCAAGGUAUCCUUUGGCGCACGAUCACUUCCUUAAUGGGUUCUAGAUCUGU ((((((((..((((((((((......)))))..)))))((((((...(((((((((.((..(((.........))).))))))))))))))))).........))))))))......... (-24.33 = -26.42 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:42 2006