Locus 6616

Sequence ID 2L_DroMel_CAF1
Location 18,600,859 – 18,600,956
Length 97
Max. P 0.990906
window10558

overview

Window 8

Location 18,600,859 – 18,600,956
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 93.61
Mean single sequence MFE -30.20
Consensus MFE -26.52
Energy contribution -26.32
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.88
SVM decision value 2.24
SVM RNA-class probability 0.990906
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18600859 97 - 22407834
AUGAUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC
....................((((((((((...((((((((...(((((((......))))))).....)))))))).....)))))...).)))). ( -25.60)
>DroSec_CAF1 77565 97 - 1
AUGGUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC
.((((.(((((((.......)))))(((((...((((((((...(((((((......))))))).....)))))))).....)))))...)))))). ( -29.30)
>DroSim_CAF1 78357 97 - 1
AUGGUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC
.((((.(((((((.......)))))(((((...((((((((...(((((((......))))))).....)))))))).....)))))...)))))). ( -29.30)
>DroEre_CAF1 77539 97 - 1
GUGGUUGUGAUUAAUCUUAUUGGCCAGCGACAGCUGGAAAUUGUAGGCGUUCGCUUGGACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC
((((.(((((..(((((......(((((....)))))..((((.((((((((....)))))))).))))......)))))..))))).))))..... ( -36.00)
>DroYak_CAF1 78017 97 - 1
AUGGUUGUGAUUAUUCUUAUUGGCCUGCGACAGCUGGAAAUUGUAGGCGUUCUCUUGGACGUCUUUAGUGUUUCCGGAUUUCUCGCAAACGUACCAC
.(((((((((....)).........(((((...((((((((...((((((((....)))))))).....)))))))).....))))).))).)))). ( -30.80)
>consensus
AUGGUUGUGAUUAUUCUUAUUGGUCUGCGACAGCUGGAAAUUGUAGGCGUUCGUUGAAACGUCUUUAGUGUUUCCGGAUUUCUCGCACCCGCACCAC
.((((.(((.....((.....))...((((...((((((((...(((((((......))))))).....)))))))).....))))...))))))). (-26.52 = -26.32 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:39 2006