Locus 6605

Sequence ID 2L_DroMel_CAF1
Location 18,549,074 – 18,549,182
Length 108
Max. P 0.558868
window10544

overview

Window 4

Location 18,549,074 – 18,549,182
Length 108
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 92.19
Mean single sequence MFE -26.50
Consensus MFE -21.47
Energy contribution -21.22
Covariance contribution -0.25
Combinations/Pair 1.18
Mean z-score -1.55
Structure conservation index 0.81
SVM decision value 0.05
SVM RNA-class probability 0.558868
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18549074 108 - 22407834
UUAUUUUGGACCUUUGUGUGCUUAA-ACAAAUAUUUUUCUUGUCAUGUUUCAAAGUGCUGUGUGGUUGGUGCAGAUUUUGCUUUUGCAACUGUUUUAGCUAUGUGAUUU
.......((..(((((...((....-((((.........))))...))..)))))..))(..(((((((.((((...((((....)))))))).)))))))..)..... ( -20.40)
>DroSim_CAF1 26956 108 - 1
UUAUUUUGGACCUUUGUGUGCUUAA-ACCAAUAUUUUUCUUGUCAUGUUUCAAAGUGCAGUGUGGCUGGUGCAGAUUUUGCUGUUGCAACUGUUUUGGCUGUGCGGUUU
.......(((((....((..(((((-((..(((.......)))...))))..)))..))(((..((..(.((((...((((....)))))))).)..))..)))))))) ( -27.40)
>DroEre_CAF1 26006 109 - 1
UUAUUUUGGACCUUUGUGUGCUUAAAACCAAUAAUUUUCUUGUCAGGUUGCAGAGUACAGUGUGGUUGGUGCAGAUUUUGCUGUUGCAACUGUUUUGGCUGUGCGGUUU
.......(((((....(((((((..((((.((((.....))))..))))...)))))))(((..((..(.((((...((((....)))))))).)..))..)))))))) ( -31.20)
>DroYak_CAF1 26149 109 - 1
UUAUUUCGGACCUUUGUGUGCUUAAAACCAAUAAUUUUCUUGUCAUGUUUCAGAGUGCAGUGUGGUUGGUGCAGAUUUUGCUGCUGCAACUGUUUUGGCUGUGCGGUUU
.......(((((....((..(((.((((..((((.....))))...))))..)))..))(((..((..(.((((...((((....)))))))).)..))..)))))))) ( -27.00)
>consensus
UUAUUUUGGACCUUUGUGUGCUUAA_ACCAAUAAUUUUCUUGUCAUGUUUCAAAGUGCAGUGUGGUUGGUGCAGAUUUUGCUGUUGCAACUGUUUUGGCUGUGCGGUUU
.......(((((.....((((((..(((..................)))...)))))).(..((((..(.((((...((((....)))))))).)..))))..)))))) (-21.47 = -21.22 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:25 2006