Locus 660

Sequence ID 2L_DroMel_CAF1
Location 1,961,500 – 1,961,595
Length 95
Max. P 0.823681
window1080

overview

Window 0

Location 1,961,500 – 1,961,595
Length 95
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 76.00
Mean single sequence MFE -19.05
Consensus MFE -10.40
Energy contribution -11.59
Covariance contribution 1.19
Combinations/Pair 1.05
Mean z-score -2.10
Structure conservation index 0.55
SVM decision value 0.69
SVM RNA-class probability 0.823681
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1961500 95 - 22407834
UUCAACCUCCCACGUUGCUGCCCUUCAUAUUUUUGCAUACAAUUUUGCAUAUUUGCAGAUAAAUCAU---------------AGCAAACCGCAGCUGCUAACCAUUGGUU
...((((......((.(((((............((((........))))..(((((...........---------------.)))))..))))).))........)))) ( -17.74)
>DroSec_CAF1 3950 80 - 1
UUCAACCUCCCACGUUGCUGCCCUUCAAAUUUUUGCAU-CUAUUUUGCAUAUUUGC-----------------------------AAACCGCAGCUGCUAACCAUUGGUA
....(((......((.(((((..(((((((...((((.-......)))).))))).-----------------------------))...))))).))........))). ( -16.84)
>DroSim_CAF1 8118 80 - 1
UUCAACCUCCCACGUUGCUGCCCUUCAAAUUUUUGCAU-CUAUUUUGCAUAUUUGC-----------------------------AAACCGCAGCUGCUAACCAUUGGUA
....(((......((.(((((..(((((((...((((.-......)))).))))).-----------------------------))...))))).))........))). ( -16.84)
>DroEre_CAF1 13140 110 - 1
GCCGACCUCCCGCGGUGCUGCCCUUCAUAUUUUUGCAUACUACUUUGCAUACUUGCAGAUAAUUUGUUGGGUUUUCAUCAGAAGCAAACCGCAGCUGCUAACCACUGGUC
...((((....((((((((((((..((.(((((((((................)))))).))).))..))))..((....)))))..)))))((.((.....)))))))) ( -24.79)
>consensus
UUCAACCUCCCACGUUGCUGCCCUUCAAAUUUUUGCAU_CUAUUUUGCAUAUUUGC_____________________________AAACCGCAGCUGCUAACCAUUGGUA
....(((......((.(((((....(((((...((((........)))).)))))..((....)).........................))))).))........))). (-10.40 = -11.59 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:13 2006