Locus 6599

Sequence ID 2L_DroMel_CAF1
Location 18,525,033 – 18,525,139
Length 106
Max. P 0.672383
window10536

overview

Window 6

Location 18,525,033 – 18,525,139
Length 106
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -33.67
Consensus MFE -25.17
Energy contribution -24.45
Covariance contribution -0.72
Combinations/Pair 1.30
Mean z-score -1.48
Structure conservation index 0.75
SVM decision value 0.29
SVM RNA-class probability 0.672383
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18525033 106 + 22407834
CAAAUCCU--GUCUCCUUCACAGAGGGUGGCAUCAGCGCCCGAUCUCCUGACGGCACGGCUGCCUCCUUCAGCAAGGCCAAUUUGGCUGCCCUGAACUUGGCCAACUC
........--............(((((.((((.(.(.(((.(.((....)))))).).).)))).))))).....((((((((..(.....)..)).))))))..... ( -32.50)
>DroSim_CAF1 2270 106 + 1
CUAAUCCU--AUCUACUUCACAGAGGGUGGCAUCAGCGCCCGAUCUCCCGACGGCACGGCUGCCUCUUUCAGCAAGGCCAAUCUGGCUGCCCUGAACCUGGCCAACUC
........--..........(((.(((..((....(.(((((......))..))).).))..)))..(((((...((((.....))))...))))).)))........ ( -28.70)
>DroEre_CAF1 2279 106 + 1
UAAAUCCC--AUCUUCUUUACAGAGGGUGGCAUCAGUGCCCGGUCCCCCGACGGUACGGCUGCCUCCUUCAGCAAGGCCAACUUGGAUGCCCUGAACCUGGCCAACUC
........--............(((((.((((.(.((((((((....)))..))))).).)))).))))).....(((((..(..(.....)..)...)))))..... ( -34.90)
>DroWil_CAF1 2036 108 + 1
CACUUCUUUUUUGCCUUUCGUAGAGGGCGGAAUCAGUGCUCGGUCUCCCGAUGGCACAGCCGCCUCCUUCAGCAAAGCCAAUCUGGCUGCCUUGAACAUGGCAAACUC
.........((((((.((((.((..(((((.....((((((((....))))..))))..)))))..)).).(((..(((.....))))))...)))...))))))... ( -36.90)
>DroYak_CAF1 2311 106 + 1
CAACUUUC--AUCUUCUUCGCAGAGGGUGGCAUCAGUGCCCGAUCCCCUGACGGUACGGCUGCCUCCUUCAGCAAGGCCAAUUUGGCUGCCCUGAACCUGGCCAACUC
........--.........((.(((((.((((.(.(((((.(.((....)))))))).).)))).))))).))..(((((.((..(.....)..))..)))))..... ( -34.20)
>DroMoj_CAF1 2054 105 + 1
CUAC-UAU--AUUUUCCUUGCAGAGGGCGGCAUUAGCGCUCGUUCACCCGACGGCACCGCUGCCUCCUUUAGCAAGGCCAAUCUGGCUGCCCUAAGUCUGGCCAACUC
....-...--.......((((.(((((.((((...(.((.((((.....)))))).)...)))).))))).))))(((((....((((......)))))))))..... ( -34.80)
>consensus
CAAAUCCU__AUCUUCUUCACAGAGGGUGGCAUCAGCGCCCGAUCUCCCGACGGCACGGCUGCCUCCUUCAGCAAGGCCAAUCUGGCUGCCCUGAACCUGGCCAACUC
......................(((((.((((.(.(.(((((......))..))).).).)))).))))).....(((((....((....))......)))))..... (-25.17 = -24.45 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:18 2006