Locus 6598

Sequence ID 2L_DroMel_CAF1
Location 18,521,974 – 18,522,082
Length 108
Max. P 0.857593
window10535

overview

Window 5

Location 18,521,974 – 18,522,082
Length 108
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 96.45
Mean single sequence MFE -31.07
Consensus MFE -28.83
Energy contribution -29.07
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.93
SVM decision value 0.81
SVM RNA-class probability 0.857593
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18521974 108 - 22407834
UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGGUCGGUUGCAUUGACAUUA
.....(((((.(((.((((((((.((((.((........)).))))...)))))))((((.((.....)).))))...........).))))))))............ ( -30.60)
>DroSec_CAF1 42376 108 - 1
UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAUUUUCUUUUGUGGUUGGUUGCAUUGACAUUA
.....(((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........))))))).(((.....))).... ( -31.20)
>DroSim_CAF1 43288 108 - 1
UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGGUUGGUUGCAUUGACAUUA
.....(((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........))))))).(((.....))).... ( -31.20)
>DroYak_CAF1 42295 104 - 1
UAUUAAGCCGCACUUUGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUUGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGG----UUGCAUUGACAUUA
.....(((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........)))))----))............ ( -31.30)
>consensus
UAUUAAGCCGCACUUCGUUGGCCUGUCAUUAUGCUAUUCUAUUGAUUUCGGCCAGCCGUCUCGGCUCACGUGACGGAGUUUCUUUUGUGGUUGGUUGCAUUGACAUUA
......((((((....(((((((.((((.((........)).))))...)))))))((((.((.....)).))))..........))))))................. (-28.83 = -29.07 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:17 2006