| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,517,100 – 18,517,198 |
| Length | 98 |
| Max. P | 0.584751 |
| Location | 18,517,100 – 18,517,198 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.09 |
| Mean single sequence MFE | -16.23 |
| Consensus MFE | -8.32 |
| Energy contribution | -9.32 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18517100 98 + 22407834 -UAUUUCUACAUACAUGACUCCAAAAAACGGGUU----ACCCCAAAUAAAAUAAAAGUAUAACGACCAAUAUGCAUAGCAGCUGGA---------------UC--AAGAAAAAAAUCUCA -..(((((.......(((.((((......(((..----..))).............(((((........)))))........))))---------------))--))))))......... ( -13.21) >DroPse_CAF1 44953 117 + 1 AUAUAUCUACAUACAAGUUUCCCA-AAACGGGUCCCCAACCCCGAAAAAAAUAAAAGUAAUUCAAGCCAUAUGCACAGCAGCUGGAGUGGAUAGAUACGUAUCU-GAAAAA-GUAUCUCG ...(((((((.(((..((((....-))))((((.....))))..............))).......(((..(((...)))..))).)))))))(((((......-......-)))))... ( -22.60) >DroSec_CAF1 37541 97 + 1 -CAUUUCUACAUACAUGACUCCAAAAAACGGGUU----AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAACAGCUGGA---------------UC--AAGAAA-AAAUCUGA -..(((((.......(((.((((.....((((..----..))))............(((((........)))))........))))---------------))--))))))-........ ( -16.11) >DroSim_CAF1 36507 97 + 1 -CAUUUCUACAUACAUGAGUCCAAAAAACGGGUU----AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAGCAGCUGGA---------------UC--AAGAAA-AAAUCUGA -..(((((.......(((.((((.....((((..----..))))............(((((........)))))........))))---------------))--))))))-........ ( -16.11) >DroYak_CAF1 37436 99 + 1 -CAUUUCUACAUACAUGACUCAAAAAAACGGGUU----AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAGCAGCUGGA---------------UCCGAAAAAA-AAAUCUAA -..((((.....................((((..----..))))...................(((((...(((...)))..))).---------------)).))))...-........ ( -13.10) >consensus _CAUUUCUACAUACAUGACUCCAAAAAACGGGUU____AACCCGAAUAAAAUAAAAGUAUAACGACCAAUAUGCACAGCAGCUGGA_______________UC__AAGAAA_AAAUCUCA ...................((((.....((((........))))............(((((........)))))........)))).................................. ( -8.32 = -9.32 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:06 2006