| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,457,564 – 18,457,675 |
| Length | 111 |
| Max. P | 0.656111 |
| Location | 18,457,564 – 18,457,675 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 92.03 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -22.99 |
| Energy contribution | -23.85 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18457564 111 - 22407834 GGUAGUGUUUGCAAAUGUGUGUCACAGUGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAUGCAUUUGAACGAGACCAGCGACAGCAGCAGAAAAUAAAAA (((..(((...(((((((((.((((..(((((......)))))..))))..((((((.....)))).))))))))))).)))..))).((....))............... ( -27.70) >DroSec_CAF1 12037 109 - 1 GGCAGUGUUUGCAAAUGUGUGUCACAGUGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAUGCAUUUGAACGAGACCAGCGACAGCAGCAGAAAA--AAAA .((.((.((..(((((((((.((((..(((((......)))))..))))..((((((.....)))).)))))))))))...)).))..((....)).))......--.... ( -25.10) >DroSim_CAF1 12098 109 - 1 GGUAGUGUUUGCAAAUGUGUGUCACAGUGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAUGCAUUUGAACGAGACCAGCGACAGCAGCAGAAAA--AAAA (((..(((...(((((((((.((((..(((((......)))))..))))..((((((.....)))).))))))))))).)))..))).((....)).........--.... ( -27.70) >DroEre_CAF1 11614 106 - 1 GGUAGUGUUUGCAAAUGUGUGUCACAGUGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAGGCAUUUGAACGAGACCAGCGACAGCAGCAGAA-----AAA (((..(((...(((((((((.((((..(((((......)))))..)))).)).((((.....)))).....))))))).)))..))).((....)).......-----... ( -27.20) >DroYak_CAF1 11649 107 - 1 GGUAGUGUUUGCAAAUGUGUGUCACAGUGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAUGCAUUUGAACGAGACCAGCGACAGCAGCAGAAA----AAA (((..(((...(((((((((.((((..(((((......)))))..))))..((((((.....)))).))))))))))).)))..))).((....))........----... ( -27.70) >DroAna_CAF1 9410 106 - 1 GCCUGUGUCUGGAAAUGUGUGUCACAGAGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAUGCAUUUGAGCG---UCAGCGUCAGCGUCAGAGGC--AGUA ..((((.(((((((...(((((((.......))))))).)))...((...(((((((.....))))..(((((......)))---))..)))..))..)))).))--)).. ( -30.40) >consensus GGUAGUGUUUGCAAAUGUGUGUCACAGUGGAUGACAUAAUUCAAAGUGAAACGGAUGACAUUCAUUACGAUGCAUUUGAACGAGACCAGCGACAGCAGCAGAAAA__AAAA (((..(((...(((((((((.((((..(((((......)))))..))))..((((((.....)))).))))))))))).)))..))).((....))............... (-22.99 = -23.85 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:10 2006