Locus 656

Sequence ID 2L_DroMel_CAF1
Location 1,957,989 – 1,958,092
Length 103
Max. P 0.594274
window1076

overview

Window 6

Location 1,957,989 – 1,958,092
Length 103
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 78.97
Mean single sequence MFE -27.33
Consensus MFE -15.50
Energy contribution -15.70
Covariance contribution 0.20
Combinations/Pair 1.15
Mean z-score -1.80
Structure conservation index 0.57
SVM decision value 0.12
SVM RNA-class probability 0.594274
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1957989 103 + 22407834
GG----------------UAUUCAUAGGAUAAGUUGCAUAUUUCCGAAAUCCACACGAUAUUUUUCCGAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU
..----------------((((.....)))).((((((.(((((((.((((((((..(((((.....((((.....)))))))))..)))))))).)))......)))).))))))... ( -24.00)
>DroSec_CAF1 450 103 + 1
GAUUUGAACU----------------GGAUAAGUUGCAUAUUUCCUAAACCCACACGAUAUUUUUCCCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU
..........----------------......((((((.....(((.((((((((..(((((......(((.....))).)))))..))))))))(((....))))))..))))))... ( -24.90)
>DroSim_CAF1 4231 119 + 1
GGCUUGAACUGCCAAUGUUAUUCAUAGGAUAAGUUGCAUAUUUCCUAAACCCACACGAUAUUUUUCCCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU
(((.......)))....(((((.....)))))((((((.....(((.((((((((..(((((......(((.....))).)))))..))))))))(((....))))))..))))))... ( -30.60)
>DroEre_CAF1 9705 110 + 1
GGC---------AUAUCCUAUUCACAUAAUUAGUUGCAUAUUUGCGCAGUACACCAUGUAUUUUUGCGAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU
.((---------(...((.(((((((((((.(((((..((((((((.(((((.....)))))..))))))))..)))))....)))))))))))((((....))))))..)))...... ( -32.60)
>DroYak_CAF1 7445 110 + 1
UGC---------AUAUCCUACUCAUAUGAUAAGUAGCAUAUUUCCAAGGUGCACAAUAUAUUUUUCGCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGCUUGUAAUAAU
(((---------(...((.(((((((((((((((.(........)...((((((...............)))))).)))...))))))))))))((((....))))))..))))..... ( -24.56)
>consensus
GGC___________AU__UAUUCAUAGGAUAAGUUGCAUAUUUCCGAAAUCCACACGAUAUUUUUCCCAGUGCACAACUUAAUGUUAUGUGGGUUACGGUUCCGUAGGUUUGUAAUAAU
................................((((((.....((..((((((((..(((((......(((.....))).)))))..))))))))(((....))).))..))))))... (-15.50 = -15.70 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:09 2006