Locus 6552

Sequence ID	2L_DroMel_CAF1
Location	18,439,096 – 18,439,210
Length	114
Max. P	0.870576

overview

Window 4

Location	18,439,096 – 18,439,210
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	97.37
Mean single sequence MFE	-31.31
Consensus MFE	-29.58
Energy contribution	-29.84
Covariance contribution	0.25
Combinations/Pair	1.04
Mean z-score	-2.04
Structure conservation index	0.94
SVM decision value	0.87
SVM RNA-class probability	0.870576
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18439096 114 + 22407834
CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACGCACCCGGCGAAACUCGGAUAAACGGCCUAAAAAAUACCUAGCC
....(((((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..)))(.....)))))....(((..............))) ( -30.35)
>DroSim_CAF1 291415 114 + 1
CUAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACGCACCCGGCGAAACUCGGAUAAACGGCCUAAAAAAUACCUAGCC
....(((((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..)))(.....)))))....(((..............))) ( -30.35)
>DroEre_CAF1 277986 114 + 1
CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACACACCCGGCGAAACUCGAAUAAACGGGCUAAAAAAUACCGAGCC
........((((........(((.((((((((((((((((.....))))).............))))))))))).)))((.....)).......))))................ ( -31.31)
>DroYak_CAF1 292976 114 + 1
CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACACACCCGGCGAAACUCGGAUAAACGGGCUAAAAAAUACCGAGCC
.......((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..))))...(((((...................))))).. ( -33.22)
>consensus
CAAAAUCCGCCCAGCGAAAUCCGCGUGUGUUCACGUUUCGGGAAACGAAAAGAAAGAAAAUAGUGUGGACACACCCGGCGAAACUCGGAUAAACGGCCUAAAAAAUACCGAGCC
.......((((..(((.....)))((((((((((((((((.....))))).............)))))))))))..))))...((((......))))................. (-29.58 = -29.84 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:14:00 2006