Locus 6543

Sequence ID 2L_DroMel_CAF1
Location 18,423,907 – 18,424,023
Length 116
Max. P 0.601443
window10443

overview

Window 3

Location 18,423,907 – 18,424,023
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.75
Mean single sequence MFE -16.32
Consensus MFE -13.18
Energy contribution -12.98
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.81
SVM decision value 0.14
SVM RNA-class probability 0.601443
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18423907 116 - 22407834
-UAU-ACUCUUACAC-AACGCCUUGUAAAAUGGCCACUUCAUAUGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAGAAC-CAAC
-...-.((((((((.-.......)))))..(((((........(((((......((((....))))...)))))...(((((((((......))))))))).).)))).)))...-.... ( -19.90)
>DroSec_CAF1 264121 117 - 1
-UAU-ACUCUAGCACCAUCGCCUUGUAAAAUGGCCACUUCAUUCGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC-CAAC
-..(-((....((......))...)))...(((((.........((((......((((....))))...))))....(((((((((......))))))))).).)))).......-.... ( -16.30)
>DroSim_CAF1 276213 114 - 1
-----ACUCUAGCACCAUCGCCUUGUAAAAUGGCCACUUCAUUCGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC-CAAC
-----..(((.((......)).........(((((.........((((......((((....))))...))))....(((((((((......))))))))).).)))))))....-.... ( -16.00)
>DroYak_CAF1 277040 115 - 1
CUUG-ACUCUAGC---AACUCCUUAUAAAAUGGCCACUUCAUACAGCAACUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC-CAAC
((((-.(((((((---(............((((.....))))............((((....))))...)))))...(((((((((......))))))))).))).)))).....-.... ( -17.00)
>DroAna_CAF1 242658 116 - 1
-UUUACCUCUGUC---AAUACCCAAUGAAAUCGCCACAUCGUAUAGCACCUACUUGAACCCAUUCAUUGUGUUUCCAAAUUGAAUUCUCACAAAUUCAAUUCGAGCCAAGAAAACCCAAC
-.....(((((..---(((((..((((((...((...........)).......((....)))))))))))))..))(((((((((......))))))))).)))............... ( -12.40)
>consensus
_UAU_ACUCUAGCAC_AACGCCUUGUAAAAUGGCCACUUCAUACGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC_CAAC
..............................(((((.........((((......((((....))))...))))....(((((((((......))))))))).).))))............ (-13.18 = -12.98 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:49 2006