Locus 6532

Sequence ID 2L_DroMel_CAF1
Location 18,395,955 – 18,396,064
Length 109
Max. P 0.996299
window10428

overview

Window 8

Location 18,395,955 – 18,396,064
Length 109
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 64.04
Mean single sequence MFE -20.40
Consensus MFE -10.15
Energy contribution -11.40
Covariance contribution 1.25
Combinations/Pair 1.29
Mean z-score -2.47
Structure conservation index 0.50
SVM decision value 2.68
SVM RNA-class probability 0.996299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18395955 109 + 22407834
CAAAUUUUUUU-----------AAUUAGAAAUACUUGGCCCUUCUUCUGGGCCUCAGUUUUUCCGUUUUAAUUCAGUUUUUAUAAAACCACAUAGGACUCUCUACAACCAAAAUAUAAGA
...........-----------.....((((.(((.(((((.......)))))..))).)))).((((((.....((((.....))))....))))))...................... ( -17.40)
>DroSec_CAF1 241020 108 + 1
CAAACCU-UUG-----------AAUUAGAUAGACUGGGCCUUUCUUCUAGGCCUCAGUUUAUUCAAUAAUAAUGCAUUUUAAUAAAAUCAAAUAGAUGUCCUUAGAUCCAAAAUAUAAUA
......(-(((-----------.(((..(((((((((((((.......))))).))))))))..)))......((((((..............)))))).........))))........ ( -22.14)
>DroSim_CAF1 252671 108 + 1
CAAACCU-UCG-----------AAUUAGAAAGACCAGGCCUUUCUUCUAGGCCUUAGUUCUUUCAAUAUAAAUGCAUUUUAAUAAAAUCAAAUAGAAGGCCUUAGAUCCAAAAUAUAAUA
....(((-((.-----------.....((((((.(((((((.......))))))..).))))))....((((.....)))).............)))))..................... ( -21.40)
>DroEre_CAF1 239730 108 + 1
CAAUCCU-UCAUAGAAUAAGUUUAUUAGAAUCACUGGUCCUUGCA-CAAG----CAGCUCUUCCCUAGUUGUUGCACUUUAAUAAAAACAAAUAUAU----UU--AGUAAAUAUGAAGGA
...((((-(((((...(((((.((((...............((((-...(----(((((.......))))))))))..............)))).))----))--).....))))))))) ( -20.65)
>consensus
CAAACCU_UCG___________AAUUAGAAAGACUGGGCCUUUCUUCUAGGCCUCAGUUCUUCCAAUAUAAAUGCAUUUUAAUAAAAUCAAAUAGAAGUCCUUAGAUCCAAAAUAUAAGA
...........................((((((((((((((.......))))).)))))))))......................................................... (-10.15 = -11.40 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:34 2006