| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,395,225 – 18,395,345 |
| Length | 120 |
| Max. P | 0.633584 |
| Location | 18,395,225 – 18,395,345 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.58 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -19.03 |
| Energy contribution | -19.55 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633584 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18395225 120 + 22407834 UUCUCUACCAAGAGAUAGGAAUAUUUUCAGAAUCCCUCCUUUCUUCACUAUUCAACUGGGCGAUUCUGAUUCAUAUGCUGUCGCUCAGGUUCCGCGCUUCAUCCAUUUUAUUGGUUUAAU .(((((....)))))..(((((......((((........))))...........(((((((((...............)))))))))))))).........(((......)))...... ( -25.76) >DroSec_CAF1 240295 120 + 1 UUCUCUACCAAGAGGUAGGAAUAUUUUCAGAAUCCCUCCUUUCUUCACUAUUCAACUGGGCGAUUCUGAUUCAUAUGCUGUCGUUCAGGUUCCGCGCUUCAUCCAUUUUAUUGGUUUAAU ...........(((((.(((((....(((((((((((....................))).))))))))........(((.....))))))))..)))))..(((......)))...... ( -26.85) >DroSim_CAF1 251944 120 + 1 UUCUCUACCAAGAGGAAGGAAUAUUUUCAGAAUCCCUCCUUUCUUCACUAUUCAACUGGGCGAUUCUGAUUCCUAUGCUGUCGCUCAGGUUCCGCGCUUGCUCACUUUCAUUGGUUUAAU ......(((((((((((.(((((.....((((........))))....)))))..(((((((((...............))))))))).))))((....))......)).)))))..... ( -26.76) >DroEre_CAF1 239010 120 + 1 UGCCCCACUAAGAGGCAGGAAUAUUUCCAGAAUACCUCCUUUCUUCACUAUUCAACUCGGCUAUUCUGAUUCAUAUGCUGUCGCUCAGGUUCCGCGCUUCAUCCAUUUUAUUGGUUUAAU ...........(((((.(((((.....(((((((((......................)).))))))).........(((.....))))))))..)))))..(((......)))...... ( -24.25) >DroYak_CAF1 249810 120 + 1 UUUCCUACUAAGAUGUAGGAAUAUUUUCAGAAUCCCUCCUUUCUUCACUAUUCAACUCUGCGAUUCUGAUUCAUAUGCUGUCGCUCAGGUUCCGCGCUUCAUCCAUUUUAUUGGUUUAAU .(((((((......))))))).....((((((((.(.......................).)))))))).....(((..(.(((.........))))..)))(((......)))...... ( -21.80) >consensus UUCUCUACCAAGAGGUAGGAAUAUUUUCAGAAUCCCUCCUUUCUUCACUAUUCAACUGGGCGAUUCUGAUUCAUAUGCUGUCGCUCAGGUUCCGCGCUUCAUCCAUUUUAUUGGUUUAAU ......((((((((((.(((((....((((((((((......................)).))))))))........(((.....))))))))..)))))..........)))))..... (-19.03 = -19.55 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:33 2006