Locus 6519

Sequence ID 2L_DroMel_CAF1
Location 18,350,531 – 18,350,623
Length 92
Max. P 0.612524
window10404

overview

Window 4

Location 18,350,531 – 18,350,623
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.57
Mean single sequence MFE -10.86
Consensus MFE -8.56
Energy contribution -8.56
Covariance contribution 0.00
Combinations/Pair 1.18
Mean z-score -1.64
Structure conservation index 0.79
SVM decision value 0.16
SVM RNA-class probability 0.612524
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18350531 92 - 22407834
C-------CUUUUUGUUUCG-CUUUUUUAGCUUCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU------U
.-------...........(-((.....))).......(((((((((((.................................)))))))))))......------. ( -11.81)
>DroSim_CAF1 202272 92 - 1
C-------CUUUUUGUUUCG-CUUUUUUAGCUUCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU------U
.-------...........(-((.....))).......(((((((((((.................................)))))))))))......------. ( -11.81)
>DroEre_CAF1 195636 104 - 1
CCGUUUCGCUUUUUGUUUCG-CUU-UUUAGCUUUGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUUCCCUUUU
...................(-((.-...))).......(((((((((((.................................)))))))))))............. ( -11.81)
>DroYak_CAF1 205397 93 - 1
C-------CUUUUUGUUUCG-CUU-UUUAGCUUUGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU----UUC
.-------...........(-((.-...))).......(((((((((((.................................)))))))))))......----... ( -11.81)
>DroAna_CAF1 177793 91 - 1
U-------CUCUUUGUUUCG-CAUUUUUAGC-UCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCACAUUAAUUUCAUUUAUUUGCCGUAAUUUUUU------U
.-------...........(-(.......))-......(((((((((((.................................)))))))))))......------. ( -12.31)
>DroPer_CAF1 235263 83 - 1
C-------CCUGUUGUUUUUCCU--------UUUGGUUUUAUGGCAAAU-UCAUUUCAAUAAAAGUCACAUUAAUUUCAUUUAUUUUCCAUUUCUUUUG-------
.-------..(((..(....((.--------...))....)..)))...-.................................................------- (  -5.60)
>consensus
C_______CUUUUUGUUUCG_CUU_UUUAGCUUCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU______U
......................................(((((((((((.................................)))))))))))............. ( -8.56 =  -8.56 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:10 2006