Locus 6512

Sequence ID 2L_DroMel_CAF1
Location 18,318,338 – 18,318,449
Length 111
Max. P 0.792149
window10391

overview

Window 1

Location 18,318,338 – 18,318,449
Length 111
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -27.16
Consensus MFE -20.40
Energy contribution -21.20
Covariance contribution 0.80
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.75
SVM decision value 0.59
SVM RNA-class probability 0.792149
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18318338 111 - 22407834
CCC-AUAGA-----AUAUUGUUAAAUACUAUUGAGACUCUUGUCCUUUUUUGCACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUAAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG
...-.....-----................((.((((................((((....))))......(((((((((..........))))))))).....)))).))...... ( -25.80)
>DroSec_CAF1 162084 111 - 1
CGC-AUAAA-----AUAUUGUUAAAUACUAUAGAGACUCUUGGCCUUUUUUGUACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG
...-.....-----...................((((....(((.......((((((....))))))....(((((((((..........))))))))).))).))))......... ( -29.20)
>DroSim_CAF1 170598 111 - 1
CGC-AUAAA-----AUAUUGUUAAAUACUAUAGAGACUCUUGGCCUUUUUUGUACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG
...-.....-----...................((((....(((.......((((((....))))))....(((((((((..........))))))))).))).))))......... ( -29.20)
>DroEre_CAF1 163731 115 - 1
CCC-AUAAAGUAAUAUGUUGCUUAAUAGUAUACAGACACUUCCCCUUUU-UUUACGUUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUACCCAUCUGAAAAAAUG
...-...((((((....)))))).........((((.............-..(((((....))))).....(((((((((..........)))))))))......))))........ ( -26.20)
>DroYak_CAF1 173460 99 - 1
CCCUAUAAAACCAUAUAUGGUUUAAUAAU-----------------UUG-AUUAUGUUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUACCCAUCGGAAAAAAUG
...(((.((((((....)))))).))).(-----------------(((-(((((((....))))).....(((((((((..........))))))))).....))))))....... ( -25.40)
>consensus
CCC_AUAAA_____AUAUUGUUAAAUACUAUAGAGACUCUUGGCCUUUUUUGUACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG
.................................((((...............(((((....))))).....(((((((((..........))))))))).....))))......... (-20.40 = -21.20 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:58 2006