Locus 6502

Sequence ID 2L_DroMel_CAF1
Location 18,279,868 – 18,279,959
Length 91
Max. P 0.989438
window10378

overview

Window 8

Location 18,279,868 – 18,279,959
Length 91
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 90.38
Mean single sequence MFE -29.58
Consensus MFE -23.72
Energy contribution -25.78
Covariance contribution 2.06
Combinations/Pair 1.09
Mean z-score -2.53
Structure conservation index 0.80
SVM decision value 2.16
SVM RNA-class probability 0.989438
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18279868 91 + 22407834
GGCGUUACCGUCAACCCAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUAC--------------UGAAAGUAAUUUCAACAAAA
...(((.((..((.(((((....))).)).))..)))))(((((((((.(((....))).)))))))))..--------------(((((....)))))...... ( -24.90)
>DroSec_CAF1 123323 105 + 1
GGCGUUACCGUCAACCAAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUUAAUUUCAACAAAA
((((((((.(((..(((..((....))...)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... ( -31.90)
>DroSim_CAF1 130108 105 + 1
GGCGUUACCGUCAACCAAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUUAAUUUCAACAAAA
((((((((.(((..(((..((....))...)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... ( -31.90)
>DroEre_CAF1 124746 105 + 1
GGCGUUACCGUCAACCAAAACGAAUGUUGAUGGAGGGACAGUUUAAGUGGCCAACGGGGGACUUAAAUUACUGUGGUGCCUUAACUGAAAUUAAUUUCAUCAAAA
((((...((((((((..........))))))))....(((((((((((..((....))..))))))...)))))..)))).....(((((....)))))...... ( -26.20)
>DroYak_CAF1 133397 105 + 1
GGCGUUACCGUCAACCAAAACGAAUGCGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUGAAUUUCAACAAAA
((((((((.(((..(((...((....))..)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... ( -33.00)
>consensus
GGCGUUACCGUCAACCAAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUUAAUUUCAACAAAA
((((((((.(((..(((..((....))...)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... (-23.72 = -25.78 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:45 2006